Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02804 ATGTGTGAAACAACACCACAACAACAACAACAACAACATCAACATCAACAAGAAACCACAATTCCTCATTCATCTTCTTCACCCCAATTTCAAATTCCTCCAACTACCCCTGAAAAATCCACTCCATCTCCAGCCCTTCTACAACGAATGCAACATGATCAATGTTACAAATGTAAAAAGATAGGTCACTGGTCACCATATTGCCCTAACAACAACAACAACAACAACACCAACAAACAGGTTTCTGCTTCTGCTACCACACTCATATACTGTCCTTGCGGTTACGGTTTTTGTGATGTTAGAAAATCTAAGAGTGAAAAAAACTACGGGAAGTCCTACTTTTCATGTCCTAACAAAAGGGGTGCACGTTGTGGTATTGGTACTTTTTTGAAGTGGTGTGATGCCATCGATGAGAGTGATTTGCAGCCTCCTTTGTTTAAGTATCCTGAATGTGAATGTGGAGCTGGTGTTTGTAAAAAAGTGGTGGAAACAGGACAATGCTATTTTATTTGCCCCATTAAACAGAATCACGGCTCTTGTGGTTACCGTGTGTCAGAATATGAACTACTCAATAAAGCAAGCAATGATGAATTGGTTAATAACACAAGCGTCATTCCTATCCGACAAAGTAGGCATAGAGATCTCAATGAATTTTTTGAAGGAGACCAAACTGATACAGCTGTGAAAAACCTGGCCAATGACTTGGCTGAGGGCAGTGATTTCCTACTAACAACAAAAAGGATGAAAATAACGGATGGTTCTGAGAATCCTTCACCCGTGGCTGTATCTGAGATTCCAGAGGGAAAATTTGGAGGATCACCAATAGAGGTGGTCATATCTGGGATTCCAGAGGGAAAATGTGAAGGATCACCAATAGAGATCGACATTTCACAACCTATCGGTTTTCCAGATTTTGAGTTTGAGGATGATCAAGAATCGATAAACTTAGCCTCGTGGGCTGCAATTGAGGTCGAAGCTCATATATCATCTCGTTTGTCAACACCCTCAAGGATCAGCTGTCGACAGAGTGTATTTCAGACGGACATTATTTCTGCTGATGCATCATTTGGTATTTTTCCATCGTTCAATCCTACTGTTAATAGTCAAAGTGAATGCAGAGACGTTGTTATCAAGAGTCCTAATCAATGTACCCAACTTTCACCAGGGAGCGAAGAAAAACTAAAGGCTGTAGAAAGACGCATTTTGATAGATGAACAGAAGCGACTTCTCGATGATCTGGCGAATTTTGATTTTCACCAGCATGAGTCTATGAGATGGACCGCAGAAGCCAGCTTTTTGGCGTTAAATCGTTTAGGACTTGATTGTAAACAATTTTCTGACTATGTATGGGACTTCATCAATCTCACAACGTCTATGGCGGATATTGACAAGTCCATGGAAAATTCCCCTACTTTGGAGGAGCACAGTAAACTCTTGGAGGAGGAAAAAGTGAGACTGGCTAACATCAAGGATGAATGTATGAAGACTGAAGCTTTGCTCCAGTCATCCAATCAGAAGCGAAAATTGCTTTCTGAAGAGGTCTCTCATCTCGAGGCTGTGCTCCGTGAAAAACAAAATGAGTTGAAATTTTGTGATTTGGAGACTACGAAGTTTGAGACCCGGCTTGGTGGTATAAAAAAAAGAATGTTGGAGGCTGACGAAACCGTAGAGGATAGAATTCTACAAACCGAAGCAGCTAGGAAAAAAGTTACAGAGAGAGACACAATGCAAATTGCAGCCAGGACAGCATTGGACAATGCTAAACTTGCTTTGGGAAACTAG 1782 0.4108 MCETTPQQQQQQHQHQQETTIPHSSSSPQFQIPPTTPEKSTPSPALLQRMQHDQCYKCKKIGHWSPYCPNNNNNNNTNKQVSASATTLIYCPCGYGFCDVRKSKSEKNYGKSYFSCPNKRGARCGIGTFLKWCDAIDESDLQPPLFKYPECECGAGVCKKVVETGQCYFICPIKQNHGSCGYRVSEYELLNKASNDELVNNTSVIPIRQSRHRDLNEFFEGDQTDTAVKNLANDLAEGSDFLLTTKRMKITDGSENPSPVAVSEIPEGKFGGSPIEVVISGIPEGKCEGSPIEIDISQPIGFPDFEFEDDQESINLASWAAIEVEAHISSRLSTPSRISCRQSVFQTDIISADASFGIFPSFNPTVNSQSECRDVVIKSPNQCTQLSPGSEEKLKAVERRILIDEQKRLLDDLANFDFHQHESMRWTAEASFLALNRLGLDCKQFSDYVWDFINLTTSMADIDKSMENSPTLEEHSKLLEEEKVRLANIKDECMKTEALLQSSNQKRKLLSEEVSHLEAVLREKQNELKFCDLETTKFETRLGGIKKRMLEADETVEDRILQTEAARKKVTERDTMQIAARTALDNAKLALGN 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02804 593 Coils Coil 472 527 - -
Trre13g02804 593 SMART c2hcfinal6 54 70 IPR001878 GO:0003676|GO:0008270
Trre13g02804 593 MobiDBLite consensus disorder prediction 1 43 - -
Trre13g02804 593 SUPERFAMILY Retrovirus zinc finger-like domains 49 75 IPR036875 GO:0003676|GO:0008270
Trre13g02804 593 ProSiteProfiles Zinc finger CCHC-type profile. 55 70 IPR001878 GO:0003676|GO:0008270
Trre13g02804 593 PANTHER OS07G0190500 PROTEIN 149 548 - -
Trre13g02804 593 MobiDBLite consensus disorder prediction 1 34 - -
Trre13g02804 593 Gene3D - 34 82 - -
Trre13g02804 593 Pfam GRF zinc finger 90 135 IPR010666 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02804 Trre-Chr13 27012067 27014953 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02804 - - mtr:112416309 658.292