Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02799 ATGGCTTCTCTTCTCTCACCTCCCCAACCCATTTTCACACCCTCCTCCATAACCAAACTCACCTCTTACCAAAAAAGATTCAATTTCTTCATTTTCAACTACCCTTTTCACCATAAAACCATAAAAAAGCTTGTTCTAGCAAGACCCTTTTTCTCTCTCAATGCAGCCTACACACAAGGACTCCATGCCCCTTCTTCACCCTCAAAAACTCACAAAATTGAGATTGAAAATGACCCTATAACAGTCCTCAACACGAGGATTCGTCGCGAATATGGAAAAAAAGGTGTTAAAAGGGCTGTTATGGACTCTGAAGAAGCTGATAAGTACATACAAATGGTGAAGGAACAACAGCAAAGGGGACTTCAGAAGCTTAAAGGTGATAGAGAGAGTAAAGATGGTACCATTAGTTATAAGGTGGACCCTTATACACTTAGTTCTGGGGACTATGTTGTGCATAAGAAAGTTGGTATTGGAAAGTTTGTTGCGATTAAACTCGACATTCCGGAGAATTCGAATGAACCTATTGAGTATGTTTACATTGAGTATGCTGATGGAATGGCAAAGCTTCCTGTTAAACAAGCTTCTAAAATGCTTTATAGATATAGTCTTCCAAGTGAAAAGAAAAAGCCTAGGGCATTGAGCAAGTTGAAGGATACTAGTACTTGGGAGATGAAAAAGATGAAAGGAAAGGTTGCAATACAGAAGATGGTTGTTGACTTGATGGAAGTCTATCTGCATAGGCTTAAACAAAGAAGGCCTCCGTATCATAAGAGTCCTGCCTTGGCTGAATTCGCAGCGCAATTTACTTATGAACCTACGCCGGATCAGAAACAGGCTTTTATTGATGTTGAGAAGGATCTGACAGAACGAGAAACTCCAATGGACAGATTAATTTGTGGAGATGTTGGTTTTGGTAAAACTGAGGTTGCAATGCGTGCTATCCAATGTGTTGTCGCAAATAAAAAGCAAGCAATGGTTCTCGCACCAACAATAGTTCTAGCAAAACAACATTTTGATGTTATTTCAGAGCGCTTTTCTGTATATCCTGATATTAAAGTTGGAATGCTTAGCAGGTTTCAGAACAAATCAGAAAAAGAAGTGAACTTGGAAATGATTAAGAATGGTGACCTAGATATTATTGTCGGGACTCATGCACTCCTAGGTGTCCGTGTTGTTTATAATAACCTTGGCCTGCTTGTGGTCGATGAGGAACAGAGGTTTGGTGTCAAACAGAAGGAGAAGATTGCTTCTCTTAAAACTTCCGTGGACGTCCTTACTTTATCTGCAACCCCTATACCGCGGACTCTTTATTTAGCTTTGACGGGATTTCGCGATGCTAGTTTAATTTCAACTCCACCGCCAGAAAGAATTCCTATCAAGACTCAGCTTTTATCATTCAGTAAGGAGAAAATAATATCAGCCATCAAGTATGAGCTGGACCGTGGTGGTCAAGTATTTTATGTTATGCCACGTATTAAAGGACTCGAAGAAGCATTGGAATTTCTTGTAGAGGCATTCCCCGATGTGAAAATAGCCGTTGCCCATGGGAAGCAATTCTCAAAGCAGTTAGAGGAATCCATGGAAAAGTTTGTTCTAGGTGAAACAAAAATCCTTGTCAGCACAAGTATAGTTGAAAGTGGGCTTGATATTCAAAATGCAAACACCATCATCATTCAGGAAGTTCAACTATTTGGCCTTGCACAGTTGTACCAGTTGCGTGGAAGGGTTGGGCGGGCAGACAAGGAAGCTTATGCATACTTATTTTATCCTGATAAGAGTATGCTCAGTCATCAAGCAGTGGAGAGACTTGCAGCTCTTGAAGAATGCCGTGAACTTGGCCAAGGCTTCCAACTAGCTGAGAAAGATATGGGTATAAGAGGTTTTGGTAATATTTTTGGCGAGCAACAAACTGGAGATGTTGGAAATGTTGGCATTGATCTTTTTTTTGAGATGCTCTTTGAGAGCTTATCCAAGGTTGAAGATCACCGTGTTGTACCAGTTCCTTATCACTCAGTACTGGTTGAATTAGATATCAATCCTCAGCTTCCTTCAGAATACATAAATCGTTTCGAGAACCCTATGGAAATAATCAATGAAGCTGAGCGAAACGCTGAGAAAGACATATGGAGTCTAATGCAATTTACAGAGAATTTTCGCCGCCAATATGGCAAAGAGCCTCGTCCGATGGAGATTATCTTAAAGAAGCTTTACTTGAGGAGAATGGCAGCTGATATAGGGGTAACCAGAATTTACTCTGCAGGGAAGATGGTGTTTATGAAAACAAACATGAGTAAAAAGGTTTTCAAAATTATGACACAGTCGGTTACATCAGATATAAAAGATGGCCGATACAAAAAAATTGATATATATAAAGATTCATTGGTTCTTGAGGGGGATCTAATTAAGGCTGAACTTCTATTAGAGTTACCAAAGGAACAACTTCTTAATTGGATCTTTAATTGCATTGCTGAACTTCATGCTTCACTACCATCCTTCATAAAGTACTAG 2508 0.3975 MASLLSPPQPIFTPSSITKLTSYQKRFNFFIFNYPFHHKTIKKLVLARPFFSLNAAYTQGLHAPSSPSKTHKIEIENDPITVLNTRIRREYGKKGVKRAVMDSEEADKYIQMVKEQQQRGLQKLKGDRESKDGTISYKVDPYTLSSGDYVVHKKVGIGKFVAIKLDIPENSNEPIEYVYIEYADGMAKLPVKQASKMLYRYSLPSEKKKPRALSKLKDTSTWEMKKMKGKVAIQKMVVDLMEVYLHRLKQRRPPYHKSPALAEFAAQFTYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAMRAIQCVVANKKQAMVLAPTIVLAKQHFDVISERFSVYPDIKVGMLSRFQNKSEKEVNLEMIKNGDLDIIVGTHALLGVRVVYNNLGLLVVDEEQRFGVKQKEKIASLKTSVDVLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKTQLLSFSKEKIISAIKYELDRGGQVFYVMPRIKGLEEALEFLVEAFPDVKIAVAHGKQFSKQLEESMEKFVLGETKILVSTSIVESGLDIQNANTIIIQEVQLFGLAQLYQLRGRVGRADKEAYAYLFYPDKSMLSHQAVERLAALEECRELGQGFQLAEKDMGIRGFGNIFGEQQTGDVGNVGIDLFFEMLFESLSKVEDHRVVPVPYHSVLVELDINPQLPSEYINRFENPMEIINEAERNAEKDIWSLMQFTENFRRQYGKEPRPMEIILKKLYLRRMAADIGVTRIYSAGKMVFMKTNMSKKVFKIMTQSVTSDIKDGRYKKIDIYKDSLVLEGDLIKAELLLELPKEQLLNWIFNCIAELHASLPSFIKY 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02799 835 Pfam DEAD/DEAH box helicase 294 432 IPR011545 GO:0003676|GO:0005524
Trre13g02799 835 Gene3D - 147 207 - -
Trre13g02799 835 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 459 624 IPR001650 -
Trre13g02799 835 SUPERFAMILY TRCF domain-like 668 779 IPR037235 -
Trre13g02799 835 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 320 595 IPR027417 -
Trre13g02799 835 CDD DEXHc_TRCF 258 451 - -
Trre13g02799 835 SUPERFAMILY CarD-like 139 207 IPR036101 -
Trre13g02799 835 SMART ultradead3 268 460 IPR014001 -
Trre13g02799 835 Gene3D - 144 658 IPR027417 -
Trre13g02799 835 Pfam CarD-like/TRCF domain 144 244 IPR003711 -
Trre13g02799 835 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 287 449 IPR014001 -
Trre13g02799 835 SMART CarD_TRCF_2 143 245 IPR003711 -
Trre13g02799 835 Pfam Helicase conserved C-terminal domain 474 579 IPR001650 -
Trre13g02799 835 Gene3D - 208 451 IPR027417 -
Trre13g02799 835 Gene3D - 672 826 IPR037235 -
Trre13g02799 835 SMART helicmild6 496 580 IPR001650 -
Trre13g02799 835 PANTHER FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER 684 794 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02799 Trre-Chr13 26973089 26978622 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02799 - - tpra:123888714 1404.42