Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02775 ATGTCGTTAGCCACCGCCACATCACCACCGGGGTTAGAAGACGAACTTTTACATCACGACAGTGACTTTTACGACGACGTCGCTACGTTCGGTGTCGTTTCACTTGACGACGAGGGTTTCCCGTCACAAGTTCCAGGCGAAGACGCTTCACCAAACGAATCAGAGAAAAGCAGTTTCGCCGCAGATTTCTATCGCTGCGGATCCGATTGCTCGTCACTGCTATTGCCAGAACGCGATTCGTTATCTTCGGGGAAGAAACTGAAACAGGCCAATCTATTTCAGATTTGGGGATTCAAGAGAAATGTTTCCGTTGGTTCTGTTGAATCTGAACCCAATCGAGATGGTTATTGTGATGATGTAGGTGAGGGAAGTGTTTCATCGGAGAAGAAGATTGTTAAACGTGGAAGTTGGGGTTCAATTTTGCCTGACAAAGGGAAAGTGGTTGAGAACCCTAAATCTTCCGGCAAGAGAAAGAGTTTTCATGGAGAAATTAGGGTTACACGTTCCTGTCCCTTTTATAAGAAAATGCCAGGTACAAACTTCACAGTTGATGCTTTTCGTTATGGATGTGTTCCGGAGTGTTCAGCATACTTTCTTACCCATTTCCATGCCGATCACTATGGTGGTCTTAGCAAGAAATGGTCACATGGCCCTATTTATTGCTCCCCTCTTACCGGACGGCTAGTTCAAATGTGTCTCTATGTAAATTCTTCGTACATCTGCCCTTTGGAATTTGACACTGAATATGTGATTGATGGTATCAAAGTAACTTTTATAGATGCTAACCATTGCCCTGGTGCAGCTTTGATTCACTTTGAGCTCCCAAATGGACAATGTTATTTGCACACTGGGGACTTTAGAGCATGTAAACTAATGCAAGATTACCATCTTTTTGTAAATAAACGTGTAAATATACTGTATTTGGATACTACATATTGCAACCCAAAGTACAAGTTTCCTTCCAAGGAAGATGTTCTCAACTATGTTGCTAAAATTACAAAGAACCACCTCAAAATGCATCCCAAAACTTTAGTGGTTGTTGGGGCATACAGTATTGGCAAAGAATGTGTATATCTTGCAATTTCTAAGGCACTTGGGGTAAAAATCTATGCAAATGCTTCAAGAAGAAGGATATTGCTAGCTTATGATTGCCCTGACTATTCAGATAGACTCTGTACAAATGGAAATAACACGCTTCTCCATGTTCTGCCCATGTCTTCTCTGAGAGTTGAGGCTTTGAAGGAATACTTAAAAACCTACAAGGAACAATTCACATCAGTATTGGCATTTCGTCCAACAGGTTGGACCTTCAGTGAGAAGATAGGCAATGATCTGGAACTAATTAAACCTGTTTCCAAAGGAAATATCACAATATATGGGGTTCCCTACAGTGAGCACTCCAGCTTCACAGAACTGCGAGATTTTGTTCAGTTTTTGAGGCCTGACAAGATAATCCCTACTGTGAATGTTGGGAGTGCCGCTAGTCGAGAAAAGATGCAATCTTACTTCCGAGACTGGTTGAAGGGCTGA 1530 0.4209 MSLATATSPPGLEDELLHHDSDFYDDVATFGVVSLDDEGFPSQVPGEDASPNESEKSSFAADFYRCGSDCSSLLLPERDSLSSGKKLKQANLFQIWGFKRNVSVGSVESEPNRDGYCDDVGEGSVSSEKKIVKRGSWGSILPDKGKVVENPKSSGKRKSFHGEIRVTRSCPFYKKMPGTNFTVDAFRYGCVPECSAYFLTHFHADHYGGLSKKWSHGPIYCSPLTGRLVQMCLYVNSSYICPLEFDTEYVIDGIKVTFIDANHCPGAALIHFELPNGQCYLHTGDFRACKLMQDYHLFVNKRVNILYLDTTYCNPKYKFPSKEDVLNYVAKITKNHLKMHPKTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILLAYDCPDYSDRLCTNGNNTLLHVLPMSSLRVEALKEYLKTYKEQFTSVLAFRPTGWTFSEKIGNDLELIKPVSKGNITIYGVPYSEHSSFTELRDFVQFLRPDKIIPTVNVGSAASREKMQSYFRDWLKG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02775 509 CDD SNM1A-1C-like_MBL-fold 158 315 - -
Trre13g02775 509 FunFam DNA cross-link repair 1A 318 466 - -
Trre13g02775 509 FunFam DNA cross-link repair 1A 176 340 - -
Trre13g02775 509 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 167 500 - -
Trre13g02775 509 Pfam DNA repair metallo-beta-lactamase 388 491 IPR011084 -
Trre13g02775 509 SUPERFAMILY Metallo-hydrolase/oxidoreductase 192 500 IPR036866 -
Trre13g02775 509 Gene3D - 177 488 IPR036866 -
Trre13g02775 509 Gene3D - 318 466 - -
Trre13g02775 509 SMART Lactamase_B_5a 167 340 IPR001279 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02775 Trre-Chr13 26742439 26745325 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02775 K15340 - gmx:100790844 801.586