Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02747 ATGGGCGCAACCAGTGACCCAACCCAAGACACTTCCGACGAACAACAAAAACGCTCCGAGATCTACACCTACGAAGCACCATGGCACATCTACGCTATGAACTGGAGCGTCCGTCGTGACAAAAAATACCGTTTAGCCATCGCTTCTCTCTTAGAACAATACCCTAACCGCGTCGAAATCGTTCAACTCGACGACACCAACGGCGAAATCAAATCCGATCCAAATCTCTCCTTCGAACATCCTTACCCACCAACCAAAGCAATCTTCATCCCTGACAAAGATTGCCACCGCCCTGACCTTTTAGCCACCTCCAGCGACTTCCTCCGTATATGGCGGATCTCCGATTCCGACGAGTCTCAATCTCGCGGCGTTGAACTCAAAAGTCTCCTCAACGGTAACAAAAACAGTGAGTATTGTGGTCCAATCACATCGTTCGATTGGAACGAAGCTGAACCGCGACGAATCGGAACTTCGAGTATTGATACTACTTGTACGATTTGGGATATTGAGAAAGAAACCGTTGATACGCAATTGATTGCACATGATAAAGAAGTTTATGATATAGCTTGGGGTGGTGTTGGTGTTTTTGCTTCTGTTTCTGCTGATGGATCCGTTAGGGTTTTCGATTTACGCGATAAAGAACATTCGACGATAATTTACGAAAGTTCTGAAGCTGATACACCATTAGTTAGACTTTGTTGGAATAAACAAGATCCTCGTTATATGGCTACAATTATTATGGATACTGCTAAGGTTGTTGTTCTTGATATTCGTTTTCCAACATTACCTGTTGTTGAATTGCAGAGACATCAAGCTAGTGTTAATGCTATTGCTTGGGCACCACATAGTTCTTGTCATATTTGTACTGCTGGTGATGATTCTCAAGCTTTGATTTGGGATCTTTCTTCAATGGGTCAACCTGTTGAAGGTGGTCTTGATCCTATTTTGGCTTATACTGCTGGTGCTGAAATTGAACAACTTCAATGGTCTTCTTCTCAGCCTGATTGGGTTGCTATTGCTTTTTCAACTAAGCTTCAGATTCTCAGGGTGTGA 1053 0.4349 MGATSDPTQDTSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDTNGEIKSDPNLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRIWRISDSDESQSRGVELKSLLNGNKNSEYCGPITSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEADTPLVRLCWNKQDPRYMATIIMDTAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQLQWSSSQPDWVAIAFSTKLQILRV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02747 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 303 IPR001680 GO:0005515
Trre13g02747 350 FunFam WD repeat-containing protein LWD1 17 349 - -
Trre13g02747 350 SUPERFAMILY WD40 repeat-like 54 308 IPR036322 GO:0005515
Trre13g02747 350 Gene3D - 9 349 IPR015943 GO:0005515
Trre13g02747 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 303 - -
Trre13g02747 350 PANTHER WD REPEAT CONTAINING PROTEIN 11 350 IPR045159 -
Trre13g02747 350 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Trre13g02747 350 SMART WD40_4 171 209 IPR001680 GO:0005515
Trre13g02747 350 SMART WD40_4 123 168 IPR001680 GO:0005515
Trre13g02747 350 SMART WD40_4 71 112 IPR001680 GO:0005515
Trre13g02747 350 SMART WD40_4 260 300 IPR001680 GO:0005515
Trre13g02747 350 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Trre13g02747 350 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02747 Trre-Chr13 26377392 26378444 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02747 K11805 - gmx:100818850 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02747 13 26377392 26378444 Trre13g02747 13 26377392 26378444 ECH