Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02689 ATGATCAGAATCAGATCTAAACTATCTGTATTCTCTGTTGTGTTATTACGCATAAGGAAGAACTCATTCACTGTTAATCACTGTGACATATTTCAGAATCCTCTTATGAGTGTTTCTTTCAATGTTTTTAAGTCTTCAAATTTTGACACTTTTTTAGCTCCACCAAAATTTTGTTTCTCAGTTAGTCCCTTTTCTACTGAATCCTCAACCAACTCTAATGCCCCCGGATTAGGATTGGATGAGACATTGAGTGATGACGACGATAATGATAATGACAATGACGACGATGATAAGAATAGTACTCAGTTACATTTAAAGGATGAAGGTTTTGTCCAAGATGTTAAAACCATTTTGGATATAATTCACAAACCGGGTTCTGGACCTTATGAAATTAAGCACAAGCTTGAGGATTGCAGTGTTAAGGTATCATCAGAGTTGGTGGTGGAGGTTCTTTCGAGAATTCGTAATGATTGGGAAGCTGCTTTCACTTTTTTCTTGTGGGCAGGGAAGCAACCTGGGTATGCTCATTCGGTTCGCGAATACCATTCAATGATATCTGTCCTTGGTAAAATGAGGAGGTTTGATACTGCTTGGACCTTAATTGAAGAAATGAGAAGGGGAAGAAATGGTCAATCTATTGTCACCCCGCAAACTCTCTTGATTATGATAAGGAAATACTGTGCTGTTCATGATGTTGGAAGGGCTATAAACACTTTCTACGCTTTTAAACGGTTTAACTTTCAAGTTGGATTGTATGAATTTCAAGGGCTTCTTTCTGCACTTTGCCGGTATAAGAATGTGCAGGATGCTGAGCACTTACTGTTCTGCAACAAAAATGTTTTCCCACTTGACACGAAAAGCTTTAACATCATTCTTAATGGATGGTGCAATTTGATCGTTAGTACGCGCAATGCAGAAAGGGTTTGGGAGGAGATGAGTAAGAGAGGAATCCGACATGATGTTGTCTCATACGCAAGTATCATATCTTGCTATTCAAAGTCTTCTAAACTTTATAGGGTGCTGCAGCTGTTTGAACAAATGAAGAAAAGGAATATTGCTCCTGATAGGAAGGTTTATAATGCGGTCATTTTTTCGCTTGCGAAGAATAGGCTTGTGAAAGAAGCTGTAAATCTTACTAGAACAATGGAAGACAACAATGTTACTCCAGATGCCATTACTTACAACTCCCTGATCAAGCCTCTTTGCAAAAACCGCAAAATTGATGAAGCTAAAGAAATTTTTGAAGAAATGTTGAAGCGACGCATATCCCCATCTATTCGGACTTTTCATGCTTTCTTCCGAATATTAAGAGTCAAGGAAGAAGTATTTGAGCTTTTGGACAAAATGAAAGAGCAGGGGTGCAACCCAACTATTGAGACTTATATAATGTTGATAAGAAAGTTTTGCCGCTGGCGCCAGCTTGATGAAGTCAATAAGATATGGAATGCAATGGTGGAAGATGGAATTGGCCATGATCGTAGCTCGTATATTGTACTGATTCATGGCCTGTTTCTGAATGGTAAGGTGGAGGAAGCATACAAATATTATACAGAGATGCAAGAGAAAGGTTTCCTACCGGAACCAAAGACCGAAGATATGCTTCAAGCATGGCTTTCTGGAAGACAACTAAGAGAGGGCCAGGTAACAGATTTAGAACAAAATCAAATAGAACATGGTAGTCCTAAACAGAATGTCAAATCTATACATAGTAAATTTGATAAGGGAAAAAATTTTCTTCGCGAACCCGAGACCAGAAGCATAACAAGAGAAGGAGGCTTTTCTTTCTGGGAGAAGTAA 1797 0.3856 MIRIRSKLSVFSVVLLRIRKNSFTVNHCDIFQNPLMSVSFNVFKSSNFDTFLAPPKFCFSVSPFSTESSTNSNAPGLGLDETLSDDDDNDNDNDDDDKNSTQLHLKDEGFVQDVKTILDIIHKPGSGPYEIKHKLEDCSVKVSSELVVEVLSRIRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISVLGKMRRFDTAWTLIEEMRRGRNGQSIVTPQTLLIMIRKYCAVHDVGRAINTFYAFKRFNFQVGLYEFQGLLSALCRYKNVQDAEHLLFCNKNVFPLDTKSFNIILNGWCNLIVSTRNAERVWEEMSKRGIRHDVVSYASIISCYSKSSKLYRVLQLFEQMKKRNIAPDRKVYNAVIFSLAKNRLVKEAVNLTRTMEDNNVTPDAITYNSLIKPLCKNRKIDEAKEIFEEMLKRRISPSIRTFHAFFRILRVKEEVFELLDKMKEQGCNPTIETYIMLIRKFCRWRQLDEVNKIWNAMVEDGIGHDRSSYIVLIHGLFLNGKVEEAYKYYTEMQEKGFLPEPKTEDMLQAWLSGRQLREGQVTDLEQNQIEHGSPKQNVKSIHSKFDKGKNFLREPETRSITREGGFSFWEK 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02689 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 320 354 IPR002885 -
Trre13g02689 598 Pfam Pentatricopeptide repeat domain 439 466 IPR002885 -
Trre13g02689 598 Pfam Pentatricopeptide repeat domain 307 363 IPR002885 -
Trre13g02689 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Trre13g02689 598 MobiDBLite consensus disorder prediction 81 95 - -
Trre13g02689 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 390 424 IPR002885 -
Trre13g02689 598 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 141 430 - -
Trre13g02689 598 MobiDBLite consensus disorder prediction 67 101 - -
Trre13g02689 598 Pfam PPR repeat 495 524 IPR002885 -
Trre13g02689 598 Pfam PPR repeat 181 206 IPR002885 -
Trre13g02689 598 Gene3D Tetratricopeptide repeat domain 111 276 IPR011990 GO:0005515
Trre13g02689 598 Gene3D Tetratricopeptide repeat domain 440 586 IPR011990 GO:0005515
Trre13g02689 598 Gene3D Tetratricopeptide repeat domain 299 439 IPR011990 GO:0005515
Trre13g02689 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 355 389 IPR002885 -
Trre13g02689 598 Pfam PPR repeat family 389 433 IPR002885 -
Trre13g02689 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 284 319 IPR002885 -
Trre13g02689 598 NCBIfam pentatricopeptide repeat 495 526 IPR002885 -
Trre13g02689 598 NCBIfam pentatricopeptide repeat 322 355 IPR002885 -
Trre13g02689 598 NCBIfam pentatricopeptide repeat 392 425 IPR002885 -
Trre13g02689 598 NCBIfam pentatricopeptide repeat 460 489 IPR002885 -
Trre13g02689 598 NCBIfam pentatricopeptide repeat 358 391 IPR002885 -
Trre13g02689 598 NCBIfam pentatricopeptide repeat 181 206 IPR002885 -
Trre13g02689 598 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 457 491 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02689 Trre-Chr13 25420689 25422485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02689 170 552 Glycosyltransferase AT1G05670 27.047 2.79e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02689 - - gmx:100785546 877.085