Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02667 ATGGGTGCGAGTCGAAAACTTCAAGGAGAGATAGATCGTGTTCTCAAGAAGGTTCAAGAAGGCGTTGAAGTCTTCGATAGTATCTGGAACAAGGTTTATGATACGGACAATGCAAATCAGAAGGAGAAATTTGAGGCAGACCTCAAAAAGGAGATTAAGAAGCTTCAGAGGTATAGAGATCAAATTAAGACTTGGATTCAATCCAGTGAAATCAAGGATAAAAAGGTTAGTGCCTCGTATGAGCAAGCGCTGGTGGATGCTCGGAAGTTAATTGAACGAGAAATGGAAAGATTTAAGATATGTGAGAAGGAAACGAAGACCAAAGCATTTTCGAAAGAAGGCTTGGGTCAACAGCCTAAGACTGATCCGAGAGAGAAGGCTAAATCGGAGACGAGGGATTGGTTAAACAATGTGGTTGGAGAGTTAGAATCTCAGATTGATAACTTTGAAGCTGAGCTTGAAGGCCTTACAGTCAAGAAGGGAAAAAACAGGCCACCTAGATTGACGCATCTGGAGACATCAATTACTCGACACAAGGCTCATATAAAGAAATGTGAATTAGTTTTAAGGCTTCTAGATAATGACGAATTGAGTCCAGAGCAGGTTAATGATGTGAAAGATTTCTTGGATGACTATGTAGAGCGTAATCAGGAAGATTTTGAAGAGTTTGATGATGTTGATGAACTATACATTTCATTACCTTTAGACAAGGTTGATACTCTAGAAGATCTTGTTACAATTCCCACAAGTGTTGCAGTGGCAAAGACAATCAGTTCATTACCTTTAGACGAGGGGAAGACTCTAGAAGATCTTGTTACAATTCCCACTGGTCTTGCAAAGGTGGCACCTGGCCTTAGCTTGAAGAATCCTTTGGCAGCATCTGCATCACAGTCAGCGTCATCACAAACATCTGAGCAAGCTGATGAGACAGCATCTCAGGATAGCAATTCTGACATTGTGGCAAAAACTCCACCTCCTAAAAGTGGTGGAATTAGCCCTTCTACTTCAACACCAACTGGCAACCATGCTACTCCTGCCTCTGTGAATGTTTCAGCTCTTAACTTGTCCAGTGCACCGGCTGCTGCTGTCCTTCCTGGTTCAAATTCTGTTCGAAATGTCCTGGAGAATGCTATTGTAAACCAGTCTGCCTCTACAAAGGAAGAAGAAATTAATAGCTTCCCTAGCCGTAGACCATCTCCGTCACTTTCTGATGTAGCACTTGCGAGGGGCAGAAACAGCTTGTCAAATCAAGGAACAGCCAGCAACCCTCTTGGTTCTGGAAACATGGTTTCTAGTAATGGGGTCCCTGGTTCAGTCCCTTCAGCCTCAGAAATAACTAAGCGAAACATATTGGGAGCTGATGATAGACTTGGAAGTAGTGGGATGGTGCCGCCTCTTGTATCCCCGCTAAGTAATAGATTGATCTTGCCTCAGGTTGGGAAGGCTAATGATGGACCGACCTCAGTTGACTCTGGTACTGTTAGTGAAGCTGCAGCTGTATCTGGGAGAGTTTTCTCTCCTTCTGGGGTTCCCGGCATGCAGTGGAGACCTGGAAGTCCCTTTCAGAATCAGAATGATGGAGGGCAGCTTCGTGGAAGAACTGAAATAGCTCCTGATCAAAGGGAAAAGTTTTTGCAGAAGTTTCAGCAAGTGCAACAACAAGGGGCCAGTACCCTTCTTAATATGTCTTCCCTTGTCGGAGGAAACCACAATCAGTTTTCTTCCCAACAACAAAATCCTCTTTTGCAGCAGTTCAACTCTCAAGGCTCATCTGTTTCTTCACAATCTGGTATGGGACTTGGTGCTCAATCCCCAAGCTTCAGTGGTATTTCGTCTGTCTCGGTACAGCAGCCCAACTCTGTTCATTCTCCGTCTAGTCAACAGCCAATTCTCGGTTTTGCTAAAGATGCAGATAAAATTGAAGAACAACAGCAACATCAAAATTTTCCTGATGAGTCAGCAATTGAATCCACGTCTAACACAGGGATTGTCAGGAATCTCATAGTTGAAGATGATTTGAAATCGCCATATCTTGTAGATTCACCTGCAGGTGTATCTGCCTCTCTTCCAGAAGCTGCTCAAATTTCCAGAGATATTGATTTGTCTCCTGGCCAACCTTTACAATCCAATCAATCCGCTGGCAACCTTGGTGTCATTGGAAGAAGAAATGGTGTTGAACTTGGAACCATTGGTGATAGCTTTAGTGCATCAAGTGTTAGTTCTGGTGGAGTTCGTGATCAACTATATAATTTGCAAATGCTTGAGGCAGCACACTTCAAAATTCCACAAGCTAAAGACTCAGAACGTCCAAGAACCTATACTCCTAGGCACCCGGCAATGACACCTCCTTGCTATCCTCAAGTACAAGCGCCTATAGTTAACAATCCTGCCTTTTGGGAGAGATTAGGTCTTGAAGGATATGGCACTGATACCCTGTTCTTTGCATTTTATTATCAACAGAACACATACCAACAATATTTGGCTGCAAAGGAGCTGAAGAAGCAGTCTTGGAGATACCACCGAAAGTATAATACATGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCTACTGATGAATTTGAGCTGGGAACATATGTTTACTTTGATTTTCATATTGCAAATGATGATCCGCAACATGGATGGTGTCAAAGAATCAAGACAGAATTCACTTTTGAGTATAATTTTCTTGAAGATGAGCTTCTTGTATAG 2709 0.4297 MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPREKAKSETRDWLNNVVGELESQIDNFEAELEGLTVKKGKNRPPRLTHLETSITRHKAHIKKCELVLRLLDNDELSPEQVNDVKDFLDDYVERNQEDFEEFDDVDELYISLPLDKVDTLEDLVTIPTSVAVAKTISSLPLDEGKTLEDLVTIPTGLAKVAPGLSLKNPLAASASQSASSQTSEQADETASQDSNSDIVAKTPPPKSGGISPSTSTPTGNHATPASVNVSALNLSSAPAAAVLPGSNSVRNVLENAIVNQSASTKEEEINSFPSRRPSPSLSDVALARGRNSLSNQGTASNPLGSGNMVSSNGVPGSVPSASEITKRNILGADDRLGSSGMVPPLVSPLSNRLILPQVGKANDGPTSVDSGTVSEAAAVSGRVFSPSGVPGMQWRPGSPFQNQNDGGQLRGRTEIAPDQREKFLQKFQQVQQQGASTLLNMSSLVGGNHNQFSSQQQNPLLQQFNSQGSSVSSQSGMGLGAQSPSFSGISSVSVQQPNSVHSPSSQQPILGFAKDADKIEEQQQHQNFPDESAIESTSNTGIVRNLIVEDDLKSPYLVDSPAGVSASLPEAAQISRDIDLSPGQPLQSNQSAGNLGVIGRRNGVELGTIGDSFSASSVSSGGVRDQLYNLQMLEAAHFKIPQAKDSERPRTYTPRHPAMTPPCYPQVQAPIVNNPAFWERLGLEGYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEFELGTYVYFDFHIANDDPQHGWCQRIKTEFTFEYNFLEDELLV 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02667 902 MobiDBLite consensus disorder prediction 382 442 - -
Trre13g02667 902 MobiDBLite consensus disorder prediction 296 345 - -
Trre13g02667 902 Pfam Not1 N-terminal domain, CCR4-Not complex component 4 235 IPR007207 GO:0005634|GO:0006355
Trre13g02667 902 Gene3D - 742 897 IPR038635 -
Trre13g02667 902 Coils Coil 41 61 - -
Trre13g02667 902 Coils Coil 132 159 - -
Trre13g02667 902 MobiDBLite consensus disorder prediction 585 629 - -
Trre13g02667 902 MobiDBLite consensus disorder prediction 110 131 - -
Trre13g02667 902 MobiDBLite consensus disorder prediction 511 530 - -
Trre13g02667 902 Pfam NOT2 / NOT3 / NOT5 family 758 896 IPR007282 GO:0006355
Trre13g02667 902 MobiDBLite consensus disorder prediction 382 399 - -
Trre13g02667 902 PIRSF NOT_su_3_5 1 902 IPR012270 GO:0006355|GO:0030015
Trre13g02667 902 PANTHER CCR4 NOT-RELATED 24 899 IPR040168 GO:0030015
Trre13g02667 902 MobiDBLite consensus disorder prediction 406 442 - -
Trre13g02667 902 FunFam CCR4-NOT transcription complex subunit 3 isoform X1 742 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02667 Trre-Chr13 25021954 25030366 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02667 K12580 - gmx:100783415 1362.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02667 13 25021954 25030366 Trre13g02667 13 25021954 25030366 ECH