Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02623 ATGGCGGCGAACGATCCAAACCACCAAACTCAGATGGCGTTAATTCTGGGACAAGATTCCACTCACTTCGAATCCCTAATTACAAATCTCATGTCAACCTCCAACGACCACCGTTCACAAGCCGAAAATCTCTTCAATTTATGCAAACAAACCTATCCCGATTCCTTAATTCTCAAACTCTCTCAACTTCTCCACACTTCCCCTAACGAACAAACACGAACCATGTCCACCATCCTCCTCCGCCGTCATCTCACGCGCCACCACGACGATTCTTTCATTTATCCACGTCTTTCCCCTTCCACTCAAACCACCCTCCGTTCCCTTCTCCTTTCATCTCTCCACAAAGAACCAGTCAAATCCATCGCTAAGAAACTATGTGACACTGTTTCTGAACTCGCTTCTGCTCTTCTTTCCGATGACATGTCTTCTTGGCCGGACTTGCTTCCTCTTCTCTTCCAGTGGGTTACTTCATCTGACCCTAGGCTTCAAGAAATTTCGTTAATTATATTCGCTCAATTGGCTCATTATATTGGTGAAACCCTACTTCCTCAATTGTCCACTCTTCACTCTGTTTTTCTCCGCTGTCTTGGCGCTGCCACTTCTTCCGATGTCCGCATCGCCGCCCTTGCCGCAAGTATCAACTTTGTTCAGTGCCTCTCCAATCCCTCTGACCGTGACAGGTTTCAGGATTTGCTGCCACTCATGATGCAGACATTGACCGAGGCATTGAATTCTGGTCAGGAGGCGACTGCGCAAGAGGCCCTTGAACTCCTCATTGAGCTTGCTGGTACTGAGCCACGTTTCCTACGAAGGCAGCTCGTTGATGTTGTCGGTGCCATGCTGCAGATTGCTGAGGCTGAGTCTTTAGAAGAAGGGACTCGCCATTTGGCTATTGAGTTTGTTGTTACACTTGCTGAGGCTAGGGAGCGTGCTCCTGGGATGATGAGGAAGTTGCCGCAGTTTGTGAAGAAGTTGTTTGGTGTGCTTTTGAACTTGTTGCTGGATATTGAAGATGATCCTGCTTGGCATGCTGCGGTGACCGAGGATGAGGATGCTGGTGAGACTACCAACTATGGATTTGGACAGGAATGTTTGGACAGACTTTCAATTGCTTTGGGTGGGAACACGATTGTGCCGGTTGCGTCTGAATTGTTGCCGACTTACTTGGCTGCCCCTGAATGGCAAAAGCACCATGCTGCGCTCGTTGCCATCGCACAAATTGCAGAGGGTTGTTCAAAGGTGATGACAAAGAATCTGGAGCATGTATTGTCAATGGTTTTGAATTCATTTTCTGACCCACACCCTAGGGTGCGATGGGCAGCTATAAATGCAATTGGGCAGTTGTCCACAGATTTAGGGCCAGACTTGCAAGTTAAATATCACCACTTAGTGCTTCCGGCATTAGCTGGTGCCATGGATGATTTTCAAAATGCTCGAGTACAGGCTCACGCTGCTTCTGCAGTGTTAAATTTCACTGAGAATTGCACCCCAGATATTCTAATACCTTATTTGGATGGGATTGTGAGCAAACTTCTTGTACTCCTTCAGGGTGGAAAGCAAATGGTTCAAGAAGGCGCTTTGACAGCTTTAGCATCAGTTGCTGATTCTTCACAGGAGAAATTTGAGAAGTATTATGACGTTGTGATTCCATACCTAAAAGCTATTTTGTTGAATGCAAATGAGAAATCCAATCGTATGCTTCGTGCCAAAGCAATGGAGTGTATTAGTTTGGTAGGAATGGCTGTTGGAAAGGCCAAGTTCAGGGATGATGCCAAACAGGTCATGGATGTCTTGATGTCACTGCAACAATCTCAACTGGATGCTGATGATCCAACTGCAAGTTACATGTTACAAGCATGGGCACGACTTTGCAAGTGTCTTGGACAAGATTTTCTCCCATACATGGGTTTTGTCATGCCTCCCTTGCTCCAGTCTGCACAACTTAAGCCTGACGTGTCAATTACATCAACAGATTCTGATGCTGAATTTGATGAAGATGATGACAGCATTGAAACCATTACTCTCGGGGATAAAAGAATAGGCATTAAGACCAGTGTCCTGGAGGAGAAGGCTACAGCATGTAACATGTTATGTTGCTATGCTGATGAGTTGAAGGAAGGTTTTTTTCCTTGGATTGACCAGGTTGCTTCCACATTGGTTCCTCTTCTTAAATTTTACTTCCATGAAGAAGTTAGGAAGGCAGCAGCTTCAGCTATGCCAGAACTGTTGTCTTCAGCAAAATTAGCAATAGAGAAGGGGCAGTCACAAGGCCGTGATGCAGCTTACCTAAAACAATTGTCTGATTATATAATTCCAAATTTGGTGGAAGCTTTACATAAGGAGCCAGAGGTAGAAATTTGTGCAAGCATGTTGGACGCACTGAATGAATGCATACAGGTCTCAGGACCACATCTAGATGAAAAACAAGTAAGGAGCATTGTTGACGAGATTAGACAAGTCATCATGGCGAGTTCATCCAGAAAGCATGAAAGAGCAGAGAGAGCCAAAGAAGAGGACTTTGATGCTGAAGAAAGAGAACTACTCAATGAAGAAAATGAGCAAGAGGAAGAACTTTTTGATCAAATCGGCGATTGTTTGGGGACATTGATAAAAACATTCAGGGCATCTTTTTTGCCTTTCTTTGATGAGCTTTCGTCATACCTAACACCTATGTTTGGTAAAGACAAAACCTCAGAAGAAAGGAGAATTGCCATTTGTATATTCGATGATGTTGCTGAGCACTGTCGTGAATCGGCTCTTAAATATTATGTTTCATTTCTTCCATTCTTGCTTGAAGCTTGCAATGATGAATGTTCTGATGTTCGACAGGCAGCTGTTTATGGTGTTGGTGTTTGTGCCGAGTTTGGTGGATCTGTTTTTAAACCCCTTGTTGGAGAGGCACTTTCAAGGTTAAATGCTGTGATAACACATCCAAATGCACGGGATTCTGATAATGTAATGGCATATGATAATGCTGTTTCAGCCCTTGGAAAAATATGCCAGTTCCACCGTGATAGCATAAATGCAGCACAGGTTGTTCCGGCCTGGCTAAGTTGTTTGCCTATAAAAGGTGATTTAATTGAGGCTAAAGTTGTGCATGACCTACTTTGTTCAATGGTGGAAAGATCTGATAGAGAACTTATAGGTCAAAACAATCAGTATCTTCCTAAGATTATTGTAATTTTTGCCGAGATATTATGTGCGGGGAATGATCTGGCAACTGAACAAACCATGAGTCGGATGATTAATTTATTGAAGCAACTTCAACAGACTTTGCCGCCTTCTACCCTTGCTTCAACCTGGTCATCTTTGCATCCTCAGCAACAGCTTGCACTTCAGTCCATCCTATCATCCTAG 3357 0.4412 MAANDPNHQTQMALILGQDSTHFESLITNLMSTSNDHRSQAENLFNLCKQTYPDSLILKLSQLLHTSPNEQTRTMSTILLRRHLTRHHDDSFIYPRLSPSTQTTLRSLLLSSLHKEPVKSIAKKLCDTVSELASALLSDDMSSWPDLLPLLFQWVTSSDPRLQEISLIIFAQLAHYIGETLLPQLSTLHSVFLRCLGAATSSDVRIAALAASINFVQCLSNPSDRDRFQDLLPLMMQTLTEALNSGQEATAQEALELLIELAGTEPRFLRRQLVDVVGAMLQIAEAESLEEGTRHLAIEFVVTLAEARERAPGMMRKLPQFVKKLFGVLLNLLLDIEDDPAWHAAVTEDEDAGETTNYGFGQECLDRLSIALGGNTIVPVASELLPTYLAAPEWQKHHAALVAIAQIAEGCSKVMTKNLEHVLSMVLNSFSDPHPRVRWAAINAIGQLSTDLGPDLQVKYHHLVLPALAGAMDDFQNARVQAHAASAVLNFTENCTPDILIPYLDGIVSKLLVLLQGGKQMVQEGALTALASVADSSQEKFEKYYDVVIPYLKAILLNANEKSNRMLRAKAMECISLVGMAVGKAKFRDDAKQVMDVLMSLQQSQLDADDPTASYMLQAWARLCKCLGQDFLPYMGFVMPPLLQSAQLKPDVSITSTDSDAEFDEDDDSIETITLGDKRIGIKTSVLEEKATACNMLCCYADELKEGFFPWIDQVASTLVPLLKFYFHEEVRKAAASAMPELLSSAKLAIEKGQSQGRDAAYLKQLSDYIIPNLVEALHKEPEVEICASMLDALNECIQVSGPHLDEKQVRSIVDEIRQVIMASSSRKHERAERAKEEDFDAEERELLNEENEQEEELFDQIGDCLGTLIKTFRASFLPFFDELSSYLTPMFGKDKTSEERRIAICIFDDVAEHCRESALKYYVSFLPFLLEACNDECSDVRQAAVYGVGVCAEFGGSVFKPLVGEALSRLNAVITHPNARDSDNVMAYDNAVSALGKICQFHRDSINAAQVVPAWLSCLPIKGDLIEAKVVHDLLCSMVERSDRELIGQNNQYLPKIIVIFAEILCAGNDLATEQTMSRMINLLKQLQQTLPPSTLASTWSSLHPQQQLALQSILSS 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02623 1118 Pfam Importin repeat 288 379 IPR041653 -
Trre13g02623 1118 SUPERFAMILY ARM repeat 854 1108 IPR016024 -
Trre13g02623 1118 SMART TOG_3 371 619 IPR034085 -
Trre13g02623 1118 Pfam HEAT repeat 926 954 IPR000357 GO:0005515
Trre13g02623 1118 Coils Coil 833 857 - -
Trre13g02623 1118 Gene3D - 15 1117 IPR011989 -
Trre13g02623 1118 Pfam Importin repeat 6 787 890 IPR041389 -
Trre13g02623 1118 PANTHER IMPORTIN BETA 27 1090 IPR040122 GO:0006606
Trre13g02623 1118 ProSiteProfiles HEAT repeat profile. 422 460 IPR021133 -
Trre13g02623 1118 Pfam Importin-beta N-terminal domain 52 113 IPR001494 GO:0006886|GO:0031267
Trre13g02623 1118 Pfam HEAT repeats 388 487 - -
Trre13g02623 1118 SUPERFAMILY ARM repeat 22 923 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02623 Trre-Chr13 24480073 24488486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02623 K20222 - gmx:100797431 1867.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02623 13 24480073 24488486 Trre13g02623 13 24480073 24488486 ECH