Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02615 ATGGCAAAAATTCCCATATTTTTGGTGGGGTTTTGGCTATTAAGTACTTGGGCTGGTTTATTGGAGACAGATGAAGACATTATAAAGTATAAGAACCCTAAAGAGTCAGTTAATATTAGGGTTGAGGAACTTATTAACAGAATGACTCTTGACGAGAAAATTGGTCAAATGTTACAAATTGAACGCAAATATGCATCTAATGGTGTGATGAAAAAGTATTTTATAGGGAGTGTTATGAGTGAGGGAGGGAGTATTCCAGTTCCAAAGGCTTCTGCTGAAAACTGGATTGATATGTTGAATGAATTTCAGAAGGATGCTTTATCAACAAGGCTTGGTATTCCAATGTTTTATGGGATTGATGCTGTTCATGGTCACAGCTCTGTTTACAAAGCAACTATTTTTCCTCACAATATTGGCCTTGGAGCTACCAGGGACCCTGAACTAGTAAAGAGAATTGGAGCTGCAACTGCACTTGAAGTTAGAGCAACAGGAATTCAGTATGTTTATGCACCTTGTGTAGCAGTCTGTAGAGATCCGAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATCCTAAAGTAGTTCAAGCTATGACTGAAATCATATCGGGATTGCAAGGGGACATCCCTGATAATATGCCAAATGGTTTTCCTTTTATTGCTGGAAAAGAAAAGGTTATAGGTTGTGCTAAGCACTACGTTGGTGACGGTGGAACAACCAATGGGATTGATGAGAGTAACACTGTTATAGATAGAGATGGAATGATGCGAATTCACATGCCAGGCTACTATAACTCCATCAGCAAGGGTGTGGCAACCGTTATGGTGTCTTACTCGAGTTGGAATGGCATAAAAATGCATGCTAACCATGACTTAGTTACTGGTTTCCTCAAAAACACTCTCCAGTTTCAGGGCTTTGTTATTTCAGATTTTGAGGGTATTGATAGGATCACCTCGCCATTTCGTGCAAACTGCACTTATTCAGTTCTAGCAGGAGTTTCTGCTGGCATTGACATGTTCATGGTTCCAAAGTTCTACAATGAATTCATTGATGAGCTAACAATGTTGGTAAAAAATGAGTTCATTCCAATGAGTCGAATAGACGATGCAGTGAGACGAATTTTGCGGGTTAAATTCATGATGGGTATTTTTGAGAACCCTTTTGGTGATTACAGTTTGGTCAAATATCTTGGGATTAAGGAGCATAGAGAACTAGCTAGGGAAGCTGTAAGGAAATCCATGGTCCTTCTAAAAAATGGTAAATCTGCTGAGAAGCCTCTATTACCTCTTCCTAAAAAGGTTCCGAAAATACTTGTGGCTGGGAGCCATGCAAATAATCTAGGATATCAGTGTGGTGGCTGGACCATTGAATGGCAAGGAATCAGCGGCAACGATAATCTCGAAGGGACTACAATTCTCACTGCAGTGAAAAACACCGTTGATCCAGAGACCATAGTGATCTACAAGGAGAACCCTGACATAGAGTTTGTCGAATCCAATGAATTTTCCTATGCCATAGTTGTAGTAGGAGAGCCTCCTTATGCTGAAATGCATGGTGACAACATGAACTTGACAATCCCCAATCCTGGTCCTGAGACCATAACAAATGTTTGTGGAGCTATAAAATGTGTGGTTATCATTATTTCGGGACGCCCTTTAGTTATCGAACCGTATATTGGTTCGATAGATGCAATTGTTGCTGGTTGGCTACCAGGTAGTGAAGGACAAGGTGTAGCTGATGTTTTATTTGGTGACTATGGTTTTACAGGAAAGCTTCCAAGAACATGGTTCAAAAGTGTTGATCAACTTCCAATGAATGTTGGAGATTCTCATTATGATCCTCTTTTCCCATTTGGGTTTGGTCTTTCTACCAAACCTACTAAAGCTATTTACTCTCAGTAG 1902 0.4022 MAKIPIFLVGFWLLSTWAGLLETDEDIIKYKNPKESVNIRVEELINRMTLDEKIGQMLQIERKYASNGVMKKYFIGSVMSEGGSIPVPKASAENWIDMLNEFQKDALSTRLGIPMFYGIDAVHGHSSVYKATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYVYAPCVAVCRDPRWGRCYESYSEDPKVVQAMTEIISGLQGDIPDNMPNGFPFIAGKEKVIGCAKHYVGDGGTTNGIDESNTVIDRDGMMRIHMPGYYNSISKGVATVMVSYSSWNGIKMHANHDLVTGFLKNTLQFQGFVISDFEGIDRITSPFRANCTYSVLAGVSAGIDMFMVPKFYNEFIDELTMLVKNEFIPMSRIDDAVRRILRVKFMMGIFENPFGDYSLVKYLGIKEHRELAREAVRKSMVLLKNGKSAEKPLLPLPKKVPKILVAGSHANNLGYQCGGWTIEWQGISGNDNLEGTTILTAVKNTVDPETIVIYKENPDIEFVESNEFSYAIVVVGEPPYAEMHGDNMNLTIPNPGPETITNVCGAIKCVVIIISGRPLVIEPYIGSIDAIVAGWLPGSEGQGVADVLFGDYGFTGKLPRTWFKSVDQLPMNVGDSHYDPLFPFGFGLSTKPTKAIYSQ 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02615 633 Pfam Glycosyl hydrolase family 3 N terminal domain 49 377 IPR001764 GO:0004553|GO:0005975
Trre13g02615 633 Gene3D - 399 625 IPR036881 GO:0004553|GO:0005975
Trre13g02615 633 SUPERFAMILY (Trans)glycosidases 28 413 IPR017853 -
Trre13g02615 633 Gene3D - 23 398 IPR036962 GO:0004553|GO:0005975
Trre13g02615 633 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 28 629 - -
Trre13g02615 633 PRINTS Glycosyl hydrolase family 3 signature 296 314 IPR001764 GO:0004553|GO:0005975
Trre13g02615 633 PRINTS Glycosyl hydrolase family 3 signature 226 242 IPR001764 GO:0004553|GO:0005975
Trre13g02615 633 PRINTS Glycosyl hydrolase family 3 signature 134 153 IPR001764 GO:0004553|GO:0005975
Trre13g02615 633 PRINTS Glycosyl hydrolase family 3 signature 110 126 IPR001764 GO:0004553|GO:0005975
Trre13g02615 633 PRINTS Glycosyl hydrolase family 3 signature 180 196 IPR001764 GO:0004553|GO:0005975
Trre13g02615 633 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 414 623 IPR036881 GO:0004553|GO:0005975
Trre13g02615 633 Pfam Glycosyl hydrolase family 3 C-terminal domain 414 623 IPR002772 GO:0004553|GO:0005975
Trre13g02615 633 FunFam Glycosyl hydrolase family protein 399 625 - -
Trre13g02615 633 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 23 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02615 Trre-Chr13 24346878 24350629 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02615 20 628 Glycoside Hydrolase AT5G20950 70.443 0.0 889
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02615 K05349 - gmx:100816705 1093.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02615 13 24346878 24350629 Trre13g02615 13 24346878 24350629 ECH