Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02604 ATGGAAGTAGCTATTTATCCACATGCACAGAAGCAGAATTCGCCGACAACAGGTCGTAAAGTTAGTCCTGGATCCCAAAAAGATTTGTGGCTTGTTGTGCGAGAAGGATCTCTGAACGATGTAGATTCAGCATTGACATCACTAAAAAAGAGTGGGGGAAATATCAATGTGAGGAACACCTTCGGGCTGACTCCTCTTCATGTTGCAGCTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTTGCGGCTGGTGCAGATCCTGATGCTAGAGATGGAGAATCAGGATGGAGTAGCCTTCATAGGGCTCTGCATTTTGGTCATCTTGCTGTTGCAAGCATCCTTCTTCAGCATGGTGCTTCGATTACATTGGAGGACTCTAAATCTCGAATTCCTATAGATCTCTTATCTGGAAACGTGTTTCAGGTTGTTGGAAATGAACATGGTTCAGTTGCTACTGAGGTATTTAGTTGGGGAAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAAAAGCTACCATGCAAAGTTGATTCACTTAATGGCTCGATTATTAAGCTGATTTCTGCGGCAAAGTTCCACAGTGTTGCACTTACTGATCGTGGAGAAGTGTATACTTGGGGATTTGGAAGAGGTGGCCGTCTTGGGCATCCTGATTTTGACATACACAGTGGTCAAGCTGCCGTCATCACTCCTCGCCAGGTGACTACTGGTCTGGGTTCTCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACTGTTATTGCTACTCAGGGCGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGGCAGCTAGGGTACACTTCTGTTGATACACAACCCACACCTCGTAGAGTATCTTCTTTGAGGTCAAGAATTGTCGCCATTGCTGCAGCAAACAAACACACAGCTGCAGTTTCTGATTTAGGTGAAGTTTTTACTTGGGGTTGCAATAGAGAGGGTCAGCTTGGTTATGGCACCTCTAACTCGGCCTCCAACTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACCTTAACCAAAGTTTCTGCTGCCAAATATCACACAATCGTATTAGGATCTGACGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTGATTACCAGGAACTTAAAGAAAAGTGGAAGCACTCCTTTAAAATTTCATCGCAAGGAACGACTTCATGTAGTTTCTATAGCTGCTGGAATGGTACACAGCACGGCTCTTACAGAAGATGGCGCATTATTTTATTGGGTCTCATCGGATCCTGATCTTAGATGTCAACAGTTATATGCTATGTGCGGAAGAAATATGGTGAGCATATCTGCAGGAAAGTACTGGACTTCAGCAGTTACAGCTACAGGCGATGTTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCACTTATCGCAACTAGGATGCACGGTGTAAAGAAGGCTACTTCAGTTTCAGTTGGCGAAACACATTTATTAATCGTGGCTTCCCTTTATCATCCTGTTTATCCTATCAACACGGTTGATAATTCTCAGAAGCTCAAGTTGAATAGAAGAAATAGTATGGAAGAGTTAAATGAAGACATTTTATTTGAGGATTCTGATTCCCATAATACAACATATACGGTTCAAAATGATAATCTTAGACAGAGATCTACTCCTAGCTTAAAAAGTCTTTGTGAAAAAGTAGCAGCAGAGTCTCTACTTGAGCCACGGAATGCCATACAATTGCTTGAGATTGCCGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGCGAGGACATTGTTATGCGCAACCTTGATTATATATTTTCAGTTTCAACACATGCTGTAGCAAGTGCAGCATTAGATGTTCTGGCGAACCTTGAGAAATTGTTTGACCAGAGATCATCTGAGCCTTGGAGTTACCGACGGCTCCCTACCCCAACTGCTACACTCCCTGTCATCATTGATAGTGAAGAGGATGATAATGAGATAGAGTATCAAAGGACTTGCGACAAACCCACCAAACTGTCTGCACTGAAATTGGAAAGACAAGATTCCTTTCTACAGCCCAAGGATGATTCTGATAGTGAAATCTCCAAAGTAGTTCGTGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAACTAAGCAGTCTAAAGGACATCTTCTCGATGACCAGCAGATCGCAAAACTTAAATCTAAATCAGCACTTGAGAGCTCACTTGCAGAGCTAGGTATTCCTGTTGAAACTTCACAGAATAGAGAGTCATCTTCTATGCTACCAGAAGGGAAAGGTAATAAGAAAGGTAAATCATCAAAAAAACAAAGGAGAAAGAGTAGCAACAAATCAAGCATGGAGCAGACAGAAACAGAATCAGTTTATTCTAAAAGTGAAGCGATTCCCGAATCTGAAGAACTTCTGGACATTGACATCATGACCGCTCCTAATTCAAAGGTGGAAGAGGATATCTGTAAACATTCAACAGCAGACCAGGGTGAAAAAGATTTAACTTTTGTTGTACAGAAGAAAGATGCTTCGGAGTTGCTGAACGGCAAGGGTCAGTCACCAAAGGTTTCAAAGAAGAAGAACAAGAAGGGTGGACTTTCTATGTTTCTGAGCGGTGCTCTTGATGAAGCCCCCAAAGAGGTGTCTCCTCCTCCACCACCGACACCAAAAAATGATGGTCCTGCATGGGGCGGGGCCAAGTTTTCGAAGGGTTCTACTTCTCTTCGTGAAATCCAGGATGAGCAGAGCAAAATAATGGGTAACAAGCCAGCTGGAGTTAAAGACAAGGTGGAAGATCTTACTGATTTTGGCAGTGCCGGGAAAATAAAGTTTAGTTCATTTCTTCATTCTAGCCCGATACCTGTTGTGTCAACTCGAAGTCCCCAGGCATCTGATGGAGATAAAAATACCCCTCCTTGGGCTGCTCCAGCAACCCCTCCTCAACCCTCTAGACTCTCTTTAAGGGACATCCAAATGCAACAGGTCAAGAAACAACAAGGCCTATCCAGCAGTCCAAAAACTAGAACTGCTGGATTCACTATAGCTACTGGTCAAGGCTCGCCATCCGAAGCAACTGGGGTGAACCGCTGGTTCAAGCCCGAAGTTGAAACACCATCCTCGATACGTTCAATTCAAATTGAGGAAAAAGCTATGAAAGATCTCAAACGCTTCTATAGCAGTGTCAAGATTGTCAAAAAGCAGCAATGTTAA 3243 0.4345 MEVAIYPHAQKQNSPTTGRKVSPGSQKDLWLVVREGSLNDVDSALTSLKKSGGNINVRNTFGLTPLHVAAWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAVASILLQHGASITLEDSKSRIPIDLLSGNVFQVVGNEHGSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLNGSIIKLISAAKFHSVALTDRGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTTGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYTSVDTQPTPRRVSSLRSRIVAIAAANKHTAAVSDLGEVFTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTKVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVITRNLKKSGSTPLKFHRKERLHVVSIAAGMVHSTALTEDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTSAVTATGDVYMWDGKKGKDKPLIATRMHGVKKATSVSVGETHLLIVASLYHPVYPINTVDNSQKLKLNRRNSMEELNEDILFEDSDSHNTTYTVQNDNLRQRSTPSLKSLCEKVAAESLLEPRNAIQLLEIADSLGADDLKKYCEDIVMRNLDYIFSVSTHAVASAALDVLANLEKLFDQRSSEPWSYRRLPTPTATLPVIIDSEEDDNEIEYQRTCDKPTKLSALKLERQDSFLQPKDDSDSEISKVVRAIRKKLQQIEMLETKQSKGHLLDDQQIAKLKSKSALESSLAELGIPVETSQNRESSSMLPEGKGNKKGKSSKKQRRKSSNKSSMEQTETESVYSKSEAIPESEELLDIDIMTAPNSKVEEDICKHSTADQGEKDLTFVVQKKDASELLNGKGQSPKVSKKKNKKGGLSMFLSGALDEAPKEVSPPPPPTPKNDGPAWGGAKFSKGSTSLREIQDEQSKIMGNKPAGVKDKVEDLTDFGSAGKIKFSSFLHSSPIPVVSTRSPQASDGDKNTPPWAAPATPPQPSRLSLRDIQMQQVKKQQGLSSSPKTRTAGFTIATGQGSPSEATGVNRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVKKQQC 1080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02604 1080 ProSiteProfiles Ankyrin repeat region circular profile. 61 92 - -
Trre13g02604 1080 MobiDBLite consensus disorder prediction 1006 1037 - -
Trre13g02604 1080 MobiDBLite consensus disorder prediction 9 23 - -
Trre13g02604 1080 Gene3D - 387 509 IPR009091 -
Trre13g02604 1080 Gene3D - 122 386 IPR009091 -
Trre13g02604 1080 PANTHER BTK-BINDING PROTEIN-RELATED 23 1072 - -
Trre13g02604 1080 Gene3D - 3 120 IPR036770 -
Trre13g02604 1080 ProSiteProfiles Ankyrin repeat profile. 61 93 IPR002110 GO:0005515
Trre13g02604 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 153 204 IPR000408 -
Trre13g02604 1080 MobiDBLite consensus disorder prediction 1006 1036 - -
Trre13g02604 1080 MobiDBLite consensus disorder prediction 855 938 - -
Trre13g02604 1080 SUPERFAMILY RCC1/BLIP-II 119 430 IPR009091 -
Trre13g02604 1080 CDD BACK 582 617 - -
Trre13g02604 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 368 IPR000408 -
Trre13g02604 1080 MobiDBLite consensus disorder prediction 1 23 - -
Trre13g02604 1080 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Trre13g02604 1080 PRINTS Ankyrin repeat signature 62 77 IPR002110 GO:0005515
Trre13g02604 1080 MobiDBLite consensus disorder prediction 961 994 - -
Trre13g02604 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 205 259 IPR000408 -
Trre13g02604 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 154 201 IPR000408 -
Trre13g02604 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 315 365 IPR000408 -
Trre13g02604 1080 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Trre13g02604 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 424 IPR000408 -
Trre13g02604 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 205 263 IPR000408 -
Trre13g02604 1080 MobiDBLite consensus disorder prediction 756 823 - -
Trre13g02604 1080 Pfam Ankyrin repeats (3 copies) 45 126 IPR002110 GO:0005515
Trre13g02604 1080 ProSiteProfiles Ankyrin repeat profile. 95 127 IPR002110 GO:0005515
Trre13g02604 1080 SUPERFAMILY Ankyrin repeat 43 135 IPR036770 -
Trre13g02604 1080 ProSiteProfiles Ankyrin repeat region circular profile. 95 126 - -
Trre13g02604 1080 PRINTS Chromosome condensation regulator RCC1 signature 264 280 IPR000408 -
Trre13g02604 1080 PRINTS Chromosome condensation regulator RCC1 signature 414 432 IPR000408 -
Trre13g02604 1080 PRINTS Chromosome condensation regulator RCC1 signature 154 170 IPR000408 -
Trre13g02604 1080 PRINTS Chromosome condensation regulator RCC1 signature 207 223 IPR000408 -
Trre13g02604 1080 PRINTS Chromosome condensation regulator RCC1 signature 188 201 IPR000408 -
Trre13g02604 1080 PRINTS Chromosome condensation regulator RCC1 signature 301 317 IPR000408 -
Trre13g02604 1080 PRINTS Chromosome condensation regulator RCC1 signature 317 331 IPR000408 -
Trre13g02604 1080 MobiDBLite consensus disorder prediction 961 978 - -
Trre13g02604 1080 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 314 IPR000408 -
Trre13g02604 1080 SUPERFAMILY RCC1/BLIP-II 408 506 IPR009091 -
Trre13g02604 1080 SMART ANK_2a 95 124 IPR002110 GO:0005515
Trre13g02604 1080 SMART ANK_2a 61 90 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02604 Trre-Chr13 24205334 24211347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02604 34 135 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 1.94e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02604 K24810 - gmx:100800604 1754.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02604 13 24205334 24211347 Trre13g02604 13 24205334 24211347 ECH