Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02600 ATGCAGACAACAAGAACGGTTCAAGTTAAGCAACTTTCAGATCTAGCTACTGAGAGGGAGATTCATGAATTCTTCTCTTTTTCTGGTGAAATTGAACATATTCAGATCGTTAGAGAATATGGGAAACCAAAGACTGCATTTGTGACATTTAAAGATCCCAAAGCGCTTGAAATCGCGTTATTGTTATCGGGAGCAACAATCGTAGACCAGATTGTGAGTATAAGTCCAGCTGACAACTATGTTGCAAATCATGAGATGCCGGATGAAAGGGTGGTGGAATATGCTATAAATGTTGCTCCTGAAGATTCCGCGTCGAATATTGAGGAGGAGAAACCTGGTGGAAGAATATATCTTAGTAAAGCACAAGATGTAGTTACAAGTATGCTGGCTAAAGGATCAGCGATAAAACAAGATGCCGTGAACAAAGCTAAAGCATTTGATGAGAAGCATCAGTTGACTGCCAATGCATCGGCAAAGGTCAGTTCGTTTGACAAGAGAGTTGGACTGACAGAGAAATTGACAGTTGGACTTTCTGTAGTGAATGAGAAAGTGAAATCTGTGGATCAGAGGCTACATGTTTCGGATAAAACAATGGCAGCAATATTTGCAGCCGAGAGGAAGTTGAACGATACTGGATCAGCCGTCAAAACAAGCAGATACGTGACTGCCGGAACATCATGGTTAACTGGTGCTTTTAGCAAAGTGGCAAAAGCCGGAAACGTTGCTGGAACTAAAACTAGAGAAAAGTTTAATATGGCCGTTTCAAACTTGACAACAAAGGAAACCACATTGGTTGTATAG 801 0.4107 MQTTRTVQVKQLSDLATEREIHEFFSFSGEIEHIQIVREYGKPKTAFVTFKDPKALEIALLLSGATIVDQIVSISPADNYVANHEMPDERVVEYAINVAPEDSASNIEEEKPGGRIYLSKAQDVVTSMLAKGSAIKQDAVNKAKAFDEKHQLTANASAKVSSFDKRVGLTEKLTVGLSVVNEKVKSVDQRLHVSDKTMAAIFAAERKLNDTGSAVKTSRYVTAGTSWLTGAFSKVAKAGNVAGTKTREKFNMAVSNLTTKETTLVV 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02600 266 Gene3D - 1 85 IPR012677 -
Trre13g02600 266 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Trre13g02600 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 5 79 IPR000504 GO:0003723
Trre13g02600 266 SMART rrm1_1 6 75 IPR000504 GO:0003723
Trre13g02600 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 67 IPR000504 GO:0003723
Trre13g02600 266 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 3 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02600 Trre-Chr13 24113230 24116079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02600 - - csav:115722993 400.208