Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02596 ATGGAAAGCAAGCATGCACATAATCGGACTTATGAGGATTTTGATCCACTTTTTAAGTGGCGTAGAGAACAAGGCAGTGACACCATTGAACTTCATCTTCCAGGTTTTAAGAGAGAGCAAATACGAATTCAGATAAACCATCTTGGTTTTTTGGTGATAAGTGGAGAGCGTCCATGTGATGGAACAAAATGGAAACGTTTCAAGAAAGAATTTGAACTTCCAAAATATTGCAATGAAGTTGCTATTCGTGGCAATTTCATGCAAAATATTCTTTCAGTTGTAATGCCAAAAAAAGTTGATCTAATACCTCAAGAGGAGCTAATAGAAGAAGAACAACAACAAATGCCAGAACTTGAAGATGTTTATGATGATAAATATCAAGAGAAAAATACATTTCAGAGTTTGAAAGTGACCAAGAACAAAGGTAAAGATATATTGTCAGAAAATCATGAGTTTGGAGAAAATGATGTAGAAACTACTAGAGAGGTTGCTCTTAAATTTATGATTGTGATTATTGTTGTATTGGTTATTGTAAATTATCTTGTGGACATGAGTAAAAGTGTTATGGCTCAAGGTCAATCATATTTTCAAAATTAG 597 0.3333 MESKHAHNRTYEDFDPLFKWRREQGSDTIELHLPGFKREQIRIQINHLGFLVISGERPCDGTKWKRFKKEFELPKYCNEVAIRGNFMQNILSVVMPKKVDLIPQEELIEEEQQQMPELEDVYDDKYQEKNTFQSLKVTKNKGKDILSENHEFGENDVETTREVALKFMIVIIVVLVIVNYLVDMSKSVMAQGQSYFQN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02596 198 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 9 113 IPR002068 -
Trre13g02596 198 SUPERFAMILY HSP20-like chaperones 8 101 IPR008978 -
Trre13g02596 198 CDD ACD_sHsps-like 28 97 - -
Trre13g02596 198 Pfam Hsp20/alpha crystallin family 23 100 IPR002068 -
Trre13g02596 198 Coils Coil 108 128 - -
Trre13g02596 198 Gene3D - 1 100 IPR008978 -
Trre13g02596 198 PANTHER HEAT SHOCK PROTEIN 26 3 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02596 Trre-Chr13 24004695 24007301 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02596 - - gmx:100801505 206.453