Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02582 ATGCAAGGTTTCCCTGGTGAAAATGAACAGGCTCTGTCAGTTGTTGGTCCAAGGCCAATGGAGTGGTCTACTGTGCCATACAATGCTCCTCGTGCTCCTGGGCCAAATGGAAAGCAGCGGACCTCTAGTTTAGAATCTCCAATCATGTTGCTGACTGGTCACCAGAGTGCTGTATATACTATGAAGTTCAATCCAACAGGGTCAGTTGTTGCATCTGGATCGCATGACAAAGAAATCTTCCTTTGGAATGTACATGGAGATTGCAAGAACTTTATGGTACTAAAAGGTCACAAGAATGCAGTTTTAGATCTTCACTGGACTTCAGATGGGACACAGATAGTCTCTGCTAGCCCTGATAAAACACTGAGGTTATGGGATACAGAAACAGGAAAACAAATCAAAAAGATGGTGGAGCATCTCTCCTATGTCAACAGTTGTTGTCCTTCCCGAAGGGGGCCACCTCTTGTTGTCAGTGGCTCTGATGATGGAACGGCGAAATTGTGGGATATGCGTCAAAGGGGTTCAATCCAAACATTCCCTGATAAATACCAGATTACTGCTGTCAGCTTCTCTGATGCCTCAGATAAGATCTACACAGGTGGTATTGATAATGATGTCAAGATATGGGATTTGCGCAAAGGTGAGGTTACCATGACCCTTCAAGGTCATCAAGATATGATCACGAGTATGCAATTGAGTCCTGATGGTTCCTACCTTCTTACAAACGGCATGGATTGCAAGCTTTGCATCTGGGATATGCGCCCATATGCTCCACAAAATCGTTGCGTGAAGATTTTGGAAGGGCACCAACACAACTTCGAGAAGAATTTGTTGAAATGTGGCTGGTCACCTGATGGAAGCAAGGTCACAGCTGGGAGTTCTGATCGAATGGTTTACATCTGGGATACCACTTCCCGAAGAATATTGTATAAACTTCCTGGGCACAATGGATCTGTTAATGAGTGTGTTTTCCATCCCAATGAACCTATTATTGGATCTTGTAGTAGTGACAAGCAGATTTATCTTGGGGAGATATGA 1038 0.4412 MQGFPGENEQALSVVGPRPMEWSTVPYNAPRAPGPNGKQRTSSLESPIMLLTGHQSAVYTMKFNPTGSVVASGSHDKEIFLWNVHGDCKNFMVLKGHKNAVLDLHWTSDGTQIVSASPDKTLRLWDTETGKQIKKMVEHLSYVNSCCPSRRGPPLVVSGSDDGTAKLWDMRQRGSIQTFPDKYQITAVSFSDASDKIYTGGIDNDVKIWDLRKGEVTMTLQGHQDMITSMQLSPDGSYLLTNGMDCKLCIWDMRPYAPQNRCVKILEGHQHNFEKNLLKCGWSPDGSKVTAGSSDRMVYIWDTTSRRILYKLPGHNGSVNECVFHPNEPIIGSCSSDKQIYLGEI 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02582 345 ProSitePatterns Trp-Asp (WD) repeats signature. 70 84 IPR019775 -
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 345 IPR001680 GO:0005515
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 219 IPR001680 GO:0005515
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 51 84 - -
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 94 131 - -
Trre13g02582 345 FunFam Small nuclear ribonucleoprotein U5 subunit 40 43 345 - -
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 254 - -
Trre13g02582 345 SUPERFAMILY WD40 repeat-like 48 342 IPR036322 GO:0005515
Trre13g02582 345 PANTHER U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 40 KDA PROTEIN 31 345 - -
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 345 - -
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 94 135 IPR001680 GO:0005515
Trre13g02582 345 ProSitePatterns Trp-Asp (WD) repeats signature. 113 127 IPR019775 -
Trre13g02582 345 ProSitePatterns Trp-Asp (WD) repeats signature. 289 303 IPR019775 -
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 254 IPR001680 GO:0005515
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 311 IPR001680 GO:0005515
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 155 178 IPR001680 GO:0005515
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 178 215 - -
Trre13g02582 345 Pfam WD domain, G-beta repeat 89 126 IPR001680 GO:0005515
Trre13g02582 345 Pfam WD domain, G-beta repeat 185 210 IPR001680 GO:0005515
Trre13g02582 345 Pfam WD domain, G-beta repeat 261 302 IPR001680 GO:0005515
Trre13g02582 345 Pfam WD domain, G-beta repeat 308 342 IPR001680 GO:0005515
Trre13g02582 345 Pfam WD domain, G-beta repeat 131 169 IPR001680 GO:0005515
Trre13g02582 345 Pfam WD domain, G-beta repeat 215 252 IPR001680 GO:0005515
Trre13g02582 345 Pfam WD domain, G-beta repeat 47 83 IPR001680 GO:0005515
Trre13g02582 345 SMART WD40_4 213 252 IPR001680 GO:0005515
Trre13g02582 345 SMART WD40_4 259 302 IPR001680 GO:0005515
Trre13g02582 345 SMART WD40_4 44 83 IPR001680 GO:0005515
Trre13g02582 345 SMART WD40_4 129 169 IPR001680 GO:0005515
Trre13g02582 345 SMART WD40_4 87 126 IPR001680 GO:0005515
Trre13g02582 345 SMART WD40_4 172 210 IPR001680 GO:0005515
Trre13g02582 345 SMART WD40_4 305 344 IPR001680 GO:0005515
Trre13g02582 345 ProSitePatterns Trp-Asp (WD) repeats signature. 197 211 IPR019775 -
Trre13g02582 345 CDD WD40 51 342 - -
Trre13g02582 345 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Trre13g02582 345 ProSiteProfiles Trp-Asp (WD) repeats profile. 51 84 IPR001680 GO:0005515
Trre13g02582 345 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Trre13g02582 345 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Trre13g02582 345 PRINTS G protein beta WD-40 repeat signature 113 127 IPR020472 -
Trre13g02582 345 Gene3D - 43 345 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02582 Trre-Chr13 23795107 23796144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02582 126 340 Miscellaneous Gene Families AT5G08390 26.852 7.36e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02582 K12857 - gmx:100803276 700.279