Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02581 ATGGACTTCAATCACTACCTCTCTGAGCTTTCCACTTCCATACAATCAATTCCTTCCTCCGACGACTTCCGTTTCAACTACAACATACCCGAATTCCGTCACCTTATCGAACAACTCACCAGAAAATCCCAATCAATGTTGAACAAAATCGGTTCCTCCGATCACATTTGGGGTCCAGGTTCATCTTTCCCCTCTGACATAGATGATGCTTATGAATGGATTGTTAATGCAAACGACGACGTTTTGGAGCTTGTTAATGAAGTTGTGGATGAGTTTCATAAGGTTCTGAAGGAGCAAGATATGGAAGAAGGAGAAGATGGGTTTTTTAAGATTAAGAAGGGGCAAAAAGGGATTAGTTATTTTGGTGATGGTGGGAATGAAACGAAACCTAAAGTGTCGTTTCATGTTCATACTCTTAGGAAACCTCAGTATCATTATAATCTTGCTGTTGATAATTCGAATCAACCTTTTGAGCATGTTTGGTTGGAAAAGAGTGAAGATGGTGGAAGGTTTATACATCCACTGGAGAAACTCTCTGTTTTAGATTTTGTTGATAAAGATATTGAGAATCTTGTACCAATAAAGCCTCCCCCAATGGAATGCACACCTTTCAAGCTTGTGGAGGAAGTCAAAGGATTGAAGGAGTTGGCTGCTAAGCTGAGTTCTGTTAATGAATTTGCGGTGGATTTGGAACATAATCAATATCGGTCTTTTCAAGGTTTGACTTGCTTGATGCAAATATCAACCCGGACTGAAGATTTTATTGTCGATACTCTGAAGCTCCGTGATCATGTTGGGACACACCTGAGGGAAGTTTTCAAGGACCCTACCAAGAAAAAGGTCTTGCATGGAGCAGATCGAGACATTGTGTGGCTGCAACGGGATTTTGGCATTTATGTCTGTAATATGTTTGACACTGGCCAGGCTTCAAGGGTGTTAAAAATGGAGAGATATAGTTTGCTACATCTTTTACAACACTTTTGTGGGGTTACAGCAAACAAAGAGTACCAGAATGCAGACTGGAGAGCGCGCCCTCTGCCTGATGTGATGATAAAATATGGAAGAGAAGATACACACTATCTGCTTTATATATATGATTTAATGAGGATCAAGCTATTTGAACTGTCTAAGGAGTCTGAAAGTCCTGATGATCCTCTGTTGGAGGTTTACAAGCGGAGTTATAATGTCTGCATGCAGCTGTACGAGAAAGAGCTTTTGACAGAAAACTCCTACCTTAATATAAAGGGGTTGCGAAGGGCTGGTTTTAATGGGCAGCAGCTTGCCATTGTTTCAGGGCTTTATGAATGGCGTGATGTTCTTGCTCGGGCAGAGGATGAGAGTACTGGGTATATATTGCCAAATAAAGTTATTCTGGACATTGCTAAACATATGCCCGTCACTGCAAGCAATCTACGGCGATTGGTAGCGGAGAGGTCAAGGCTCCCATATGTTGAGCGCAATCATGATATCATTGTTAACATTGTCAGACATTCTATGCAAAATGCTGCTGCATTTGAAGAAGCTGCACTTCGTTTGAAAGAAGAACAAGCTGCCTTTGAAGAAGAACTTCGTTTGAAAGAAGAACAGACAGCAAATGTGTCAAATGTAGCATCTGTTAAGGATGGAACTGAAGCTCCCCAATCTCATTCCTCAAATTTGAAGGATGAATGTGCAGCAAATGGAAGCATTGGAATTAAAAATGCCACTATTGCCTCTACATTGAAGGAAAACGGAGCAAATGTTCAGGTGCAAAAAATGCCTACTGGTGCGTGCGAGACAAAGCTGCTTGGCAATTCAGTTTCAGAAGGGAATGGTTTTCCTAGCAAAAAGGGCAAGAAAGACATCAAGGTAGAACAGATTGGATCATCAGTCAATCTTCCATGCCATTCATTTTTGGGCAACAATGAGAAGTGCACCATAACAGTAGACTTAGATTCTGACTCCGACGATATGATGTTCGAGTAA 1965 0.4122 MDFNHYLSELSTSIQSIPSSDDFRFNYNIPEFRHLIEQLTRKSQSMLNKIGSSDHIWGPGSSFPSDIDDAYEWIVNANDDVLELVNEVVDEFHKVLKEQDMEEGEDGFFKIKKGQKGISYFGDGGNETKPKVSFHVHTLRKPQYHYNLAVDNSNQPFEHVWLEKSEDGGRFIHPLEKLSVLDFVDKDIENLVPIKPPPMECTPFKLVEEVKGLKELAAKLSSVNEFAVDLEHNQYRSFQGLTCLMQISTRTEDFIVDTLKLRDHVGTHLREVFKDPTKKKVLHGADRDIVWLQRDFGIYVCNMFDTGQASRVLKMERYSLLHLLQHFCGVTANKEYQNADWRARPLPDVMIKYGREDTHYLLYIYDLMRIKLFELSKESESPDDPLLEVYKRSYNVCMQLYEKELLTENSYLNIKGLRRAGFNGQQLAIVSGLYEWRDVLARAEDESTGYILPNKVILDIAKHMPVTASNLRRLVAERSRLPYVERNHDIIVNIVRHSMQNAAAFEEAALRLKEEQAAFEEELRLKEEQTANVSNVASVKDGTEAPQSHSSNLKDECAANGSIGIKNATIASTLKENGANVQVQKMPTGACETKLLGNSVSEGNGFPSKKGKKDIKVEQIGSSVNLPCHSFLGNNEKCTITVDLDSDSDDMMFE 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02581 654 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 6 532 IPR045092 GO:0000175|GO:0000467
Trre13g02581 654 SUPERFAMILY HRDC-like 408 500 IPR010997 GO:0000166|GO:0044237
Trre13g02581 654 FunFam Protein RRP6-like 2 isoform A 138 408 - -
Trre13g02581 654 Coils Coil 502 529 - -
Trre13g02581 654 Gene3D HRDC domain 409 507 IPR044876 -
Trre13g02581 654 Pfam 3'-5' exonuclease 207 369 IPR002562 GO:0003676|GO:0006139|GO:0008408
Trre13g02581 654 Gene3D - 139 408 IPR036397 GO:0003676
Trre13g02581 654 ProSiteProfiles HRDC domain profile. 423 505 IPR002121 GO:0003676
Trre13g02581 654 Pfam PMC2NT (NUC016) domain 15 93 IPR012588 GO:0000176|GO:0006396
Trre13g02581 654 CDD Rrp6p_like_exo 200 392 - -
Trre13g02581 654 FunFam Putative exosome component 10 410 507 - -
Trre13g02581 654 SMART 35exoneu6 204 373 IPR002562 GO:0003676|GO:0006139|GO:0008408
Trre13g02581 654 SMART hrdc7 423 504 IPR002121 GO:0003676
Trre13g02581 654 Pfam HRDC domain 426 474 IPR002121 GO:0003676
Trre13g02581 654 SUPERFAMILY Ribonuclease H-like 140 418 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02581 Trre-Chr13 23770231 23779444 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02581 K12591 - gmx:100804872 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02581 13 23770231 23779444 Trre13g02581 13 23770231 23779444 ECH