Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02342 ATGGCGGAAAATGCTTCAACTGAACTGAAGATGTTTGTGTTTTTCTGTTTATTACTAATTCAATTTTCTGTTTCTGAAATCATTTTTGAAGAGCGCTTCGAAGATGGATGGCGAAGTCGTTGGGTAAAATCAGACTGGAAAAGTAGCGAAGGCAAAGCCGGTTCGTTCAAGCACACGGCTGGGAAATGGGCTGGAGATCCAGATGATAAAGGTATCCAAACATCTAACGATGCCAAACACTTTGCCATATCGGCAAAGATACCGGAATTCAGCAACAAGAACAGAACACTGGTCTTCCAGTACTCTATAAAGTTTGAACAAGAGATTGAGTGTGGTGGAGGTTACATGAAACTCCTCTCTGGATTTGTTAATCAAAAGAAATTTGGCGGGGATACGCCGTACAGTATAATGTTTGGACCAGATTTATGTGGCACGGACACAAAGAAGCTGCATGTGATAGTCTCTTACCAAGGTCAAAATTACCCGCTAAAGAAGGATCTGCAGTGCGAAACTGACAAGTTAACTCATTTCTACACATTCATTCTCCGGCCAGATGCTACATACAGTGTTCTGGTTGATAATAGAGAGAGAGATTCTGGAAGCATGTATACAGATTGGGATATTCTCCCTCCGAAAAAAATCAAAGACGTCAAGGCAAAAAAGCCTGCAGACTGGGATGACAGAGAGTATATTGAAGACCCTAATGCTGTCAAACCCGAGGGATACGATTCAATCCCGGCAGAAATTCCTGATCCAAAGGCTAAAGAGCCTGATAGTTGGGATGAAGACGAAGATGGAATATGGAAGCGGCCGAAGATACCAAATCCAGCATACAAAGGACCATGGAAACGAAAGAAAATCAAGAATCCTAACTACAAAGGGAAATGGAAAACTCCATGGATAGATAATCCAGAATTTGAAGACGACCCCGATCTTTATGTGCTGAAGCCTATCAAATATGTCGGCATTGAAGTTTGGCAGGTTAAAGGCGGTTCAGTATTTGACAACATTTTGATTTGTGACGATCCTGAATATGCTAAACAAGTTGTCGATGAAGTATTCGCCAATAGGGAGATTGAAAAAGAAGGTTTTGAGGAAGCAGAGAAAATAAGAAAAGCTCAAGAGGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGCGGAGAAAAGATAGAGGTTATGATCGTCGGGACAGACATAGAGACAGATATAGAAAGCATCGCCGTGATTCCATGGATGATTATCATGTAAGTCGTGATTTCTTTGTTGATTATTCTTTCTAA 1287 0.4141 MAENASTELKMFVFFCLLLIQFSVSEIIFEERFEDGWRSRWVKSDWKSSEGKAGSFKHTAGKWAGDPDDKGIQTSNDAKHFAISAKIPEFSNKNRTLVFQYSIKFEQEIECGGGYMKLLSGFVNQKKFGGDTPYSIMFGPDLCGTDTKKLHVIVSYQGQNYPLKKDLQCETDKLTHFYTFILRPDATYSVLVDNRERDSGSMYTDWDILPPKKIKDVKAKKPADWDDREYIEDPNAVKPEGYDSIPAEIPDPKAKEPDSWDEDEDGIWKRPKIPNPAYKGPWKRKKIKNPNYKGKWKTPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKGGSVFDNILICDDPEYAKQVVDEVFANREIEKEGFEEAEKIRKAQEEEEAQRAREEGERRRKDRGYDRRDRHRDRYRKHRRDSMDDYHVSRDFFVDYSF 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02342 428 Pfam Calreticulin family 30 265 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 Pfam Calreticulin family 266 339 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 FunFam Calreticulin 1b 26 212 - -
Trre13g02342 428 Coils Coil 365 392 - -
Trre13g02342 428 FunFam Calreticulin 211 312 - -
Trre13g02342 428 SUPERFAMILY P-domain of calnexin/calreticulin 207 322 IPR009033 GO:0005509|GO:0005515
Trre13g02342 428 MobiDBLite consensus disorder prediction 249 270 - -
Trre13g02342 428 PANTHER CALRETICULIN AND CALNEXIN 10 385 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 MobiDBLite consensus disorder prediction 228 271 - -
Trre13g02342 428 MobiDBLite consensus disorder prediction 365 399 - -
Trre13g02342 428 MobiDBLite consensus disorder prediction 365 411 - -
Trre13g02342 428 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 224 IPR013320 -
Trre13g02342 428 PIRSF Calreticulin 6 413 IPR009169 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 ProSitePatterns Calreticulin family signature 1. 104 119 IPR018124 GO:0005509
Trre13g02342 428 Gene3D Calreticulin/calnexin, P domain 200 320 IPR009033 GO:0005509|GO:0005515
Trre13g02342 428 PRINTS Calreticulin signature 249 271 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 PRINTS Calreticulin signature 132 148 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 PRINTS Calreticulin signature 221 234 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 PRINTS Calreticulin signature 320 340 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 PRINTS Calreticulin signature 287 306 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 PRINTS Calreticulin signature 106 124 IPR001580 GO:0005509|GO:0005783|GO:0006457|GO:0051082
Trre13g02342 428 ProSitePatterns Calreticulin family signature 2. 136 144 IPR018124 GO:0005509
Trre13g02342 428 Gene3D - 26 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02342 Trre-Chr13 21189207 21192405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02342 10 347 Miscellaneous Gene Families AT5G61790 35.411 1.92e-61 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02342 K08057 - gmx:100776652 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02342 13 21189207 21192405 Trre13g02342 13 21189207 21192405 ECH