Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02340 ATGGCGGCGAGAAGAACCGGTTTGCCTCTATTGAAATACCTAAGAGTGCAAGTTGATACTCTTCCCCTCAACAACCAATCTCCTTTGCGTCTTCTTCCTAATTTCTTCCTTCGTCACTTCAGCGAAGAGGTTAGGGGTTCGTTTCTCGATAAATCTGAGGTCACAGATCGCGTCGTTTCATGCGTCAAAAATTTCCAGAAAGTAGATCCTTCTAAGGTTACTCCAACTGCTCATTTCCAGAATGACCTTGGATTGGATAGTTTAGATGCTGTAGAGATTGTGATGGCTCTTGAGGAAGAGTTTGGATTTGAGATTCCTGACAATGAAGCAGACAAGATCAACTCCATCAACCTTGCCGTTGACTTCATTGCATCTCATCCTCAGGCAAAGTAG 393 0.4377 MAARRTGLPLLKYLRVQVDTLPLNNQSPLRLLPNFFLRHFSEEVRGSFLDKSEVTDRVVSCVKNFQKVDPSKVTPTAHFQNDLGLDSLDAVEIVMALEEEFGFEIPDNEADKINSINLAVDFIASHPQAK 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02340 130 Gene3D - 41 129 IPR036736 -
Trre13g02340 130 SUPERFAMILY ACP-like 50 126 IPR036736 -
Trre13g02340 130 SMART Phosphopantetheine attachment site 55 113 IPR020806 GO:0031177
Trre13g02340 130 FunFam Acyl carrier protein 41 129 - -
Trre13g02340 130 ProSiteProfiles Carrier protein (CP) domain profile. 52 127 IPR009081 -
Trre13g02340 130 Pfam Phosphopantetheine attachment site 56 122 IPR009081 -
Trre13g02340 130 Hamap Acyl carrier protein [acpP]. 53 127 IPR003231 GO:0006633
Trre13g02340 130 ProSitePatterns Phosphopantetheine attachment site. 82 97 IPR006162 -
Trre13g02340 130 NCBIfam acyl carrier protein 52 126 IPR003231 GO:0006633
Trre13g02340 130 PANTHER ACYL CARRIER PROTEIN 12 128 IPR003231 GO:0006633
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02340 Trre-Chr13 21183344 21185225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02340 1 130 Acyl Lipid Metabolism Gene Families AT1G65290 74.615 4.39e-61 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02340 K03955 - gmx:100305656 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02340 13 21183344 21185225 Trre13g02340 13 21183344 21185225 ECH