Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02339 ATGTTGATTCTGTTCCTTTTTATCTTCCTCTTCGTGCTCTTCTTATTCAAATTCGCCAACGCCTATGGCGATTTCACTTTAATGTCAAAGAAGCAACCAAAACGCCAACTTATTGAAGATAAGGTTTTTTGGATTACTGGTGCAAGCCGTGGAATTGGGGTAATTCTAGCTCAACAGCTTGCAAGTTTAGGGGCCAAGTTAATCCTCTCTGCAAGGAATGAAGTTGAACTAAACCAAGTAAAGTCACAACTGAAAGGTAAGCATGCACCTGACGGAGTCAAGATTTTACCGTTGGATTTAACGTCTGGAGAAGATTCTCTTCAGAAGGTTGTCGATATAGCAGAATCCTTTTTTCCAGATTCTGGTGTTGATTATATGATCCATAATGCTGCTTTTGAGCGTCCTAAATCATCTGTCTTAGACGTAACCGCGGATGTTCTCAAGGCAACATTCGATGTCAATGTTCTGGGGACAATAACTCTTACAAAGCTCTTGGCGCCTTTCATGTTGAAGAGGGGGAAAGGTCATTTTGTGGTGATGAGTAGTGCAGCAGGAAAAACACCTGCCCCAGGTCAGGCTATATACTCCGCTTCTAAATTTGCACTAAATGGGTACTTCCATTCATTGCGTTCAGAGCTCTGTCAGAAAGGAATCCAGGTAACTGTTGTTTGTCCTGGTCCCATAACAACAGCAAATAACTCTGGATCGAAAGTTCCATCTGAGAAGCGTGTGTCAGTGTCAGCGGAGAAGTGTGCTGAGCTGACGATTATTGCTGCAACCCATGGCTTAAAGGAAGCTTGGATATCATATCAGCCTGTGCTTGCTGTCATGTACCTTGTTCAGTACATGCCAACTATTGGTTATTGGCTCATGGACAAGGGTAAAAGTCGAGTGGAGGCTGCTGCAGAGAAGGGAAACACTTATTCTTTGAGCCTATTATTGGGAAAAAAGAAGGCAGGGTGA 963 0.432 MLILFLFIFLFVLFLFKFANAYGDFTLMSKKQPKRQLIEDKVFWITGASRGIGVILAQQLASLGAKLILSARNEVELNQVKSQLKGKHAPDGVKILPLDLTSGEDSLQKVVDIAESFFPDSGVDYMIHNAAFERPKSSVLDVTADVLKATFDVNVLGTITLTKLLAPFMLKRGKGHFVVMSSAAGKTPAPGQAIYSASKFALNGYFHSLRSELCQKGIQVTVVCPGPITTANNSGSKVPSEKRVSVSAEKCAELTIIAATHGLKEAWISYQPVLAVMYLVQYMPTIGYWLMDKGKSRVEAAAEKGNTYSLSLLLGKKKAG 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02339 320 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 2 318 - -
Trre13g02339 320 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 41 231 - -
Trre13g02339 320 PRINTS Glucose/ribitol dehydrogenase family signature 42 59 IPR002347 -
Trre13g02339 320 PRINTS Glucose/ribitol dehydrogenase family signature 216 233 IPR002347 -
Trre13g02339 320 PRINTS Glucose/ribitol dehydrogenase family signature 195 214 IPR002347 -
Trre13g02339 320 PRINTS Glucose/ribitol dehydrogenase family signature 121 132 IPR002347 -
Trre13g02339 320 PRINTS Glucose/ribitol dehydrogenase family signature 169 185 IPR002347 -
Trre13g02339 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 38 290 IPR036291 -
Trre13g02339 320 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 182 210 IPR020904 GO:0016491
Trre13g02339 320 Gene3D - 22 301 - -
Trre13g02339 320 Pfam short chain dehydrogenase 41 234 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02339 Trre-Chr13 21176291 21180574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g02339 30 265 Acyl Lipid Metabolism Gene Families AT3G06060 31.950 3.98e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02339 K11165 - gmx:100795991 506.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02339 13 21176291 21180574 Trre13g02339 13 21176291 21180574 ECH