Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02337 ATGGTGGTTGTTTTGCAGCCTCTGTGCTGCAACACCATTATAACCACCGCCAAAACCTTTACTTCTTCTAAACAACCACTTTTCATTTCACAACTTCCCTCTTCTTCTTATCCTTCAACACACTTCTTATCTTTCCGCACCACCACTCTCTCCCGTCCACCATCTCTTTTGTTTGCGACGCCGGAGAATCAATTGAGCGTTGGGGAAGGAGAGGAAGATATTCATACAAGTGATTCAGCACTTCAAGATTTTTATTCTCTGAGGAGAGACGTTGAAATTGCATCACAGCGTGTCAAAGAGATTAGAGAATCATCTGGTCTACAGCTGTTGGAGCAAGAACTTGCCAACTTGGAAGAGGAAGCGTCTTCTAGCTCCTTTTGGGATGATCAAGCCAAAGCTCAACAGACTCTTTCGACATTGGCTGATGTCAAAGATAAGATAAAATTGCTCAATGAGTACAAAACTCAGGTTGAGGATGCAGAAACAATAGTTATGCTGACAGAGGAAATGGAATCCGTTGATAAAGGGCTTTATGAAGAAGCTTCTAGTCTTATTAAAGAACTGAATAAGTCACTTGATCGGTTTGAACTGACTCAACTTCTTTCTGGTCCTTACGATAAAGAAGGTGCTGTAATCTCTATTACAGCAGGTGCTGGAGGGACTGATGCACAGGACTGGGCCGACATGCTTCTTAGGATGTACGTGAGATGGGCTGAGAAACAAAGATACAAAACTAGAGTGGTTGAGAAATCTCCAGGAGAAGAAGCTGGAATTAAATCTGCCACCGTCGAAGTTGAAGGTCGTTATGCGTATGGGTATTTGTCAGGGGAAAAAGGAACACATCGCATTGTTCGGCAATCCCCTTTTAATTCCAAAGGTCTTCGTCAGACAAGCTTTTCTGGTGTTGAAGTCATGCCTCTCCTTCCAGAAGAATCTCTGAATGTTGAAATTCCCGAAGAGGACCTGGAGTATAGTTTTTCAAGAGCAGGTGGAAAAGGAGGTCAGAATGTTAACAAGATTGAAAGTGCCGTTCGAATTACACATATCCCAACTGGTGTCACTCTTCGCTGCACAGAGGAGAGATCCCAACTAGCAAATAAGGTGAAAGCTTTACGCCGTTTGAAAGCCAAGCTGTTGGTGATAGCTGAAGAGCAACGCGCATCTGAATTTAAGCAGATTCGAGGAGACGTAGTGAAGGCTGAATGGGGACAACAAATAAGAAATTATGTCTTCCATCCATACAAACTTGTAAAGGATGTAAGAACCGCGCAAGAAACGACAGATATCACCTCTGTTATGGATGGAGAGTTGGATCCCTTTATTAAATCTTACCTCAAACACAAGTTTAGTATGACACTGTCTACAAGTGGGGTCAACTAA 1380 0.4283 MVVVLQPLCCNTIITTAKTFTSSKQPLFISQLPSSSYPSTHFLSFRTTTLSRPPSLLFATPENQLSVGEGEEDIHTSDSALQDFYSLRRDVEIASQRVKEIRESSGLQLLEQELANLEEEASSSSFWDDQAKAQQTLSTLADVKDKIKLLNEYKTQVEDAETIVMLTEEMESVDKGLYEEASSLIKELNKSLDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDWADMLLRMYVRWAEKQRYKTRVVEKSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPFNSKGLRQTSFSGVEVMPLLPEESLNVEIPEEDLEYSFSRAGGKGGQNVNKIESAVRITHIPTGVTLRCTEERSQLANKVKALRRLKAKLLVIAEEQRASEFKQIRGDVVKAEWGQQIRNYVFHPYKLVKDVRTAQETTDITSVMDGELDPFIKSYLKHKFSMTLSTSGVN 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02337 459 Gene3D - 308 404 - -
Trre13g02337 459 SMART PCRF_a_2 165 277 IPR005139 GO:0006415
Trre13g02337 459 NCBIfam peptide chain release factor 2 94 446 IPR004374 GO:0005737|GO:0006415|GO:0016149
Trre13g02337 459 Coils Coil 178 198 - -
Trre13g02337 459 Coils Coil 100 120 - -
Trre13g02337 459 SUPERFAMILY Release factor 110 449 IPR045853 -
Trre13g02337 459 Hamap Peptide chain release factor 2 [prfB]. 83 449 IPR004374 GO:0005737|GO:0006415|GO:0016149
Trre13g02337 459 Gene3D - 212 442 - -
Trre13g02337 459 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 328 344 IPR000352 GO:0003747|GO:0006415
Trre13g02337 459 Pfam RF-1 domain 313 421 IPR000352 GO:0003747|GO:0006415
Trre13g02337 459 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 81 448 - -
Trre13g02337 459 Pfam PCRF domain 110 302 IPR005139 GO:0006415
Trre13g02337 459 Gene3D Release factor 90 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02337 Trre-Chr13 21162970 21166858 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02337 K02836 - gmx:100775574 696.427
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02337 13 21162970 21166858 Trre13g02337 13 21162970 21166858 ECH