Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02078 ATGAATTATTTTCCAGACGAGGTAATAGAACATGTGTTTGATTATGTGGTGTCACATAGTGACAGAAACTCTTTGTCTTTGGTATGCAAAAGTTGGTATAGAATAGAAAGATTTACAAGGCAAAGAGTTTTCATAGGAAACTGTTACTCAATTAGTCCTGAGAGGTTAGTGGAAAGGTTTCCTGATCTGAAATCTTTGACTTTGAAAGGAAAACCTCATTTTGCTGATTTCAGTTTAGTTCCTCATGGTTGGGGTGGTTTTGTTTATCCATGGATTGAAGCACTTGCCAAGAGTAAGGTTGGATTGGAAGAACTTAGGTTGAAGAGGATGGTGGTTTCAGATGAGAGTCTTGAGCTACTTTCTCGTTCTTTCATGAATTTTAAGTCTTTAGTTCTTGTTAGCTGTGAAGGGTTCACTACTGATGGTCTTGCTGCTGTTGCTGCTAATTGCAGGTCTCTTAGGGAGCTAGACCTGCAAGAGAATGAAGTGGAAGATCACAAAGGACAGTGGCTAAGTTGTTTTCCTGAAAACTGCACATCACTTGTCTCTCTTAATTTTGCTTGCCTTAAAGGAGAGATTAATATCGGAGCACTTGAGAGACTTGTGGCAAGATCACCTAACCTCAAGAGTCTAAGGTTAAATCGTTCTGTTCCTGTTGATGCCCTCCAAAGGATACTAATGCGAGCGCCTCAGCTAATGGATCTTGGAATTGGATCATTTTTCCATGATCTTAATTCAGATGCCTATGCAAAGCTTAAGACTACCATTCTTAAGTGCACGTCGATAACCAGTTTGTCGGGATTTTTGGAAGTTGCTCCTTTTAGCCTTGCAGCTATGTATCCAATTTGCGAGAACTTAACATCGTTGAACTTGAGTTATGCAGCAGGCATTCAGGGCAGTGAGCTGATAAAACTTATTCGCCACTGTGGGAAACTTCAGCGTTTATGGATAATGGATTGCATTGGAGACAAAGGACTAGGTGTTGTTGCTAGTACATGTAAAGATTTACAAGAATTGAGGGTTTTTCCATCGGCACCATTTGGAAATCAAGGAGCTGTTACAGAAAAAGGATTGGTTGCAATATCAATGGGATGCCGCAAGCTTCACTCGTTACTCTACTTCTGCCACCAGATGACAAATGCTGCTCTCATAACAGTGGCCAAGAACTGCCCGAATTTTATACGTTTTAGGTTATGTATTCTCGATGCAACAAAACCTGACCCCGACACAATGCAGCCATTGGATGAAGGTTTTGGGGCGATCGTGCAGTCATGCAAGCGATTGAGGAGGCTATCACTCTCCGGTCAGTTGACCGACCAGGTGTTCCTTTACATTGGAATGTATGCTGAGCAGCTTGAAATGTTGTCTATTGCATTTGCTGGCGAGAGCGACAAGGGAATGCTCTACGTATTGAACGGATGCAAAAAGCTTCGCAAGCTTGAGATAAGAGACTGTCCTTTTGGCGACACAGCGCTTCTAACTGACATAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCGTGCGAGGTAACTGTTGGAGCGTGCAAGACATTGGCTAAGAAGATGCCGAGGTTGAATGTGGAGATCTTCGGTGAAAGTGAACAAGCAGATTGTTATGTGGAAGACGGACTAAGAGTCGAGAAGATGTATTTGTATCGTACGGTGGCTGGGAAAAGGGAGGATGCACCGGAATATGTATGGACTCTTTAG 1716 0.4266 MNYFPDEVIEHVFDYVVSHSDRNSLSLVCKSWYRIERFTRQRVFIGNCYSISPERLVERFPDLKSLTLKGKPHFADFSLVPHGWGGFVYPWIEALAKSKVGLEELRLKRMVVSDESLELLSRSFMNFKSLVLVSCEGFTTDGLAAVAANCRSLRELDLQENEVEDHKGQWLSCFPENCTSLVSLNFACLKGEINIGALERLVARSPNLKSLRLNRSVPVDALQRILMRAPQLMDLGIGSFFHDLNSDAYAKLKTTILKCTSITSLSGFLEVAPFSLAAMYPICENLTSLNLSYAAGIQGSELIKLIRHCGKLQRLWIMDCIGDKGLGVVASTCKDLQELRVFPSAPFGNQGAVTEKGLVAISMGCRKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDATKPDPDTMQPLDEGFGAIVQSCKRLRRLSLSGQLTDQVFLYIGMYAEQLEMLSIAFAGESDKGMLYVLNGCKKLRKLEIRDCPFGDTALLTDIGKYETMRSLWMSSCEVTVGACKTLAKKMPRLNVEIFGESEQADCYVEDGLRVEKMYLYRTVAGKREDAPEYVWTL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02078 571 Pfam Leucine Rich repeat 149 165 IPR001611 GO:0005515
Trre13g02078 571 FunFam Transport inhibitor response 1 1 40 - -
Trre13g02078 571 SMART LRR_CC_2 365 389 IPR006553 -
Trre13g02078 571 SMART LRR_CC_2 99 123 IPR006553 -
Trre13g02078 571 SMART LRR_CC_2 124 149 IPR006553 -
Trre13g02078 571 SMART LRR_CC_2 283 308 IPR006553 -
Trre13g02078 571 SMART LRR_CC_2 474 499 IPR006553 -
Trre13g02078 571 SMART LRR_CC_2 425 448 IPR006553 -
Trre13g02078 571 Pfam F-box 2 41 IPR041567 -
Trre13g02078 571 Gene3D Ribonuclease Inhibitor 41 571 IPR032675 -
Trre13g02078 571 FunFam Transport inhibitor response 1 41 571 - -
Trre13g02078 571 CDD F-box_AtTIR1-like 1 40 - -
Trre13g02078 571 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 82 530 - -
Trre13g02078 571 SUPERFAMILY RNI-like 15 399 - -
Trre13g02078 571 Gene3D - 1 40 - -
Trre13g02078 571 Pfam Transport inhibitor response 1 protein domain 61 107 IPR041101 -
Trre13g02078 571 SMART fbox_2 4 45 IPR001810 GO:0005515
Trre13g02078 571 SUPERFAMILY RNI-like 358 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02078 Trre-Chr13 18139560 18142160 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02078 - - gmx:100812516 1040.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g02078 13 18139560 18142160 Trre13g02078 13 18139560 18142160 ECH