Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g02054 ATGAGTATTAGTAGTTGGAGAACTCTTCTTCTACGGATCGGCGATAAGAGTCCCGAATATGGACCTTCCTCCGATTTCAAAGACCACATTGAAACTTGTTTCGGTGTTCTTCGTCGTGAGCTTGAACACTCCGAAACTGAGATTTTGGAGTTCCTTCTTACATGTGCTGAACAATTGCCTCACAAGATTCCTTTCTATGGAACACTGATTGGCTTGATTAACTTGGAAAACGAGGACGCCGTGAAAAAACTGGTGGACAAAACTCAATCTAAATTTCAGGATGCCTTAGATACTGGAAACTGCAACGGAATTCGTATTTTATTGAGGCTGATGACTGTCATGATGTGCAGTAAAGCTCTTCAACCAAGCTCTCTAGTAGATGTCTTTGAAACATTTTTATCATCAGCTGCCACAACAGTAGACGAGGAAAAAGGGAATCCCTTATGGCAGCCATGTGCTGACTTTTACATAGCTTGCATTTTATCATGCCTCCCATGGGGTGGGGCTGAACTTGCTGAGCAAATTCCGGAAGATATTGAGAGAGTAATGGTTGGTATAGAAGCTTACTTGAGCATCCGAAAACATACTTCTGACACTGGTTTATCCTTTTTTGAGAATGTTGATGAAATTGAGAGAGATCTTAATAACAAGGATTTTTTGGAGGACTTATGGGATAGAATACAAGTTTTATCAACCAATGGATGGAAAGTTGAAAGTGTTCCAAGACCTCATCTTTCCTTTGAAGCTCAGCTGGTTGTTGGGAAGTCCCATGAATTTGGGACAGTAAGCTGCTCCAATTTACCAACCATGTCTTCAGTTCCTTCTGGTGTATCATTTGGTAAAGAGAAGCACGAGGCAGAATTAAAGTATCCTCAAAGAATACGGCGGCTAAATATATTTCCTCCCAGTAAGATGGAGGATATCCAGCCTATAGATCGATTTGTGGTGGAAGAGTATCTCTTAGATGTGCTTTTTTATTTCAATGGCAGTCGAAAGGAATGTGCTTCTTTCATGGTTGGCCTGCCGGTTACCTTCAGATATGAGTACCTCATGGCTGAGACAATATTTTCTCAGTTGCTTATGCTTCCGCAACCACCTTTCAAACCAGTATATTACACACTGGTTATTATTGACCTTTGTAAGGCTCTTCCTGGAGCTTTTCCTGCAGTTGTTGCTGGAGCAGTTCGTGCTCTCTTTGAAAAGATTGCTGATTTGGATATGGAATGCCGAACACGACTAATCCTTTGGTTCTCACACCATTTATCAAACTTTCAGTTCATATGGCCTTGGGAAGAGTGGGCTTATGTGTTAGATCTCCCTAGGTGGGCTCCTCAACGTGTCTTTGTTCAGGAGGTTTTGGAGAGGGAAGTTCGCTTATCATACTGGGACAAAGTCAAGCAGAGCATTGAAAATGCACCTGGTTTAGAAGAATTGCTTCCTCCAAAGGGTGGACCGAATTTCAATCTTGGTGCAGAAGATGGTAAAGAAAACAATGAACAGCTGCTGTCTGGACAGCTCAACGAAATGGTTAAAGGGAAGGCACCTGTTCGTGAAATAATCTCATGGATTGATGAAAGCGTGTTTCCTAATAATAGTCTAGAAGTTACACTCAGAGTTGTCGTACAGACTCTTCTCAACATTGGATCCAAGAGTTTCACTCATTTGATAACTGTATTAGAAAGATATGGGCAAGTAATTTCAAAAATGTGTCCTGATGAGGATAAGCAAATTATGCTGATTGCTGAAGTCAGTTCTTTCTGGAAGAGTAACACCCAAATGACAGCAATAGCAATTGACCGAATGATGGGTTATCGACTTGTATCAAATCTGGCTATTGTGAGATGGGTCTTCTCAGAAGAAAATGTCGAGCAATTTCACATGTCAGATCGTCCTTGGGAGGTCCTTAGAAATGCAGTAAGCAAAACATACAACCGTATTTCTGATCTAAGGAAAGAAATATTATCTCTTAAAAAGAATATTTCTTCAGCTGAAGTAGCTGTCAATGAGGCAAAAGCAGAGATAGATGCTGCAGAGTCAAAACTAGCACTTGTGGATGGTGAACCAGTTCTTGGTGAAAATCCTGTAAGGGTGAATAGATTGAAATCACGTGCTGAAAAAGCACAGGAGGAGCTGGTATCTATTCAAGAATCTGTAGAAGCTAAGGAAGCTCTTCTTGGCCGAGCAACTGATGAAAATGAGGCATTGTTTCTCTTATTGTTCAAAAGCTTCTCAAGTGTATTGACTGATCGCCTTCCCAAGGGATCTGGAGCTAGAACACTTCGTGAATGGAAGTCTGCACAAGTTGAAGATATGGCAGTTGACTCTGAAGAACCATCAACTATGGAATTAGACAATGAGAATCAGATACCTCAAAACAGTCAGTCAAATGGTGGGAAGAAAAATGTTGCTTATAATGTAGGTGAAAAGGAGCAGTGGTGTATCACTACTTTGAGTTATGTGAAGGCCTTTTCTAGGCAGTACGCTTCTGAGATATGGGCCCATATTGAAAAGTTGGATGCAGAGGTATTAACAGAGGATGCACCTCCCCTTTTTCGGTCAGCTCTTTGTTCCGGTCTTCGAAGACCAGTTAATGAGGCTTGA 2601 0.4129 MSISSWRTLLLRIGDKSPEYGPSSDFKDHIETCFGVLRRELEHSETEILEFLLTCAEQLPHKIPFYGTLIGLINLENEDAVKKLVDKTQSKFQDALDTGNCNGIRILLRLMTVMMCSKALQPSSLVDVFETFLSSAATTVDEEKGNPLWQPCADFYIACILSCLPWGGAELAEQIPEDIERVMVGIEAYLSIRKHTSDTGLSFFENVDEIERDLNNKDFLEDLWDRIQVLSTNGWKVESVPRPHLSFEAQLVVGKSHEFGTVSCSNLPTMSSVPSGVSFGKEKHEAELKYPQRIRRLNIFPPSKMEDIQPIDRFVVEEYLLDVLFYFNGSRKECASFMVGLPVTFRYEYLMAETIFSQLLMLPQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRALFEKIADLDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGGPNFNLGAEDGKENNEQLLSGQLNEMVKGKAPVREIISWIDESVFPNNSLEVTLRVVVQTLLNIGSKSFTHLITVLERYGQVISKMCPDEDKQIMLIAEVSSFWKSNTQMTAIAIDRMMGYRLVSNLAIVRWVFSEENVEQFHMSDRPWEVLRNAVSKTYNRISDLRKEILSLKKNISSAEVAVNEAKAEIDAAESKLALVDGEPVLGENPVRVNRLKSRAEKAQEELVSIQESVEAKEALLGRATDENEALFLLLFKSFSSVLTDRLPKGSGARTLREWKSAQVEDMAVDSEEPSTMELDNENQIPQNSQSNGGKKNVAYNVGEKEQWCITTLSYVKAFSRQYASEIWAHIEKLDAEVLTEDAPPLFRSALCSGLRRPVNEA 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g02054 866 SMART if4_15 10 231 IPR003890 GO:0003723|GO:0005515
Trre13g02054 866 FunFam Nuclear cap-binding protein subunit 1 5 271 - -
Trre13g02054 866 Pfam MIF4G like 504 764 IPR015174 GO:0016070
Trre13g02054 866 Coils Coil 646 687 - -
Trre13g02054 866 SUPERFAMILY ARM repeat 3 298 IPR016024 -
Trre13g02054 866 Gene3D - 5 271 - -
Trre13g02054 866 MobiDBLite consensus disorder prediction 782 801 - -
Trre13g02054 866 MobiDBLite consensus disorder prediction 776 801 - -
Trre13g02054 866 Pfam MIF4G domain 23 194 IPR003890 GO:0003723|GO:0005515
Trre13g02054 866 PANTHER CAP BINDING PROTEIN 4 855 IPR027159 GO:0000339|GO:0005846|GO:0006406
Trre13g02054 866 Gene3D - 494 854 - -
Trre13g02054 866 Gene3D - 299 483 - -
Trre13g02054 866 Coils Coil 697 724 - -
Trre13g02054 866 FunFam Nuclear cap-binding protein 298 483 - -
Trre13g02054 866 Pfam MIF4G like 342 469 IPR015172 GO:0016070
Trre13g02054 866 SUPERFAMILY ARM repeat 295 480 IPR016024 -
Trre13g02054 866 SUPERFAMILY ARM repeat 480 852 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g02054 Trre-Chr13 17819220 17833100 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g02054 K12882 - gmx:100811738 1490.71