Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00692 ATGTTGAAATCTAAGGAACCTCCATTATGTTCATGTAAAAATCCATTGTGGGTTGCTGCTTTCTTCTTCAAACAGCTTAAGAAAGCTCAAATCATAGATGCAGACATTTCTTCTGCTGTAGACAAGATTATGCATTATGAAATGGACGCTGTTTCCTATAGAATACTTGCATATCTTCTTCTTGGTGTTGTCAAAACATACTCAAAGAAGGTTGAGTATCTACTGAATGATTGCAATAACGTGCTCGGTGGAATCAACAAATTTGTGATAAATAAAAAGAACAACGCACCTGTGGAAGCCGTGTGTATGGCTTTTACTATGCCTGACACATTTGATTTGGATGCTCTTGATCTCGGTGAACTTGAAGATACTTCTGGGTACCATACTGCTCCACCTGAACAAATCACTCTTAAAGAGGTTTTGTCTAATGCTGGAGGATTTGCGCAGTTTTCTCAAGAGAGGTTTGAGGATTTTGATATGCAATTTGAGGGTTTTTGTTTAGGCGAAACTAGCTGCTCTCGTGACCATGCTATGGCGGAAAATATTCTTCAATTTCAACCGATGGACTTCGACTTTGAAGCTTTTCCATCAAATAGTTTAAATAATCTCATTGAAGAATCTTCTGAAACACTATTAGAAGAGTTTCACAAAAAGGTATCTTTTGAAGAGGGAACCTCCAGTGTTAATCCGTCAGAACCAACAATCCCAGATGAAACGCCTCAATCTAAGTTTCATGGTGGTTCAATTGCAAAACCAGGTGCTACGAAATCAGATTTTTTGCTTATTCCTACACCAGATGCAATGGAATGTGCTCACTTTTCAAGGAAAAGAAAATTTAAAATTGATAAAACGACAACCTTGTCTAGTGAGATACTCAGACAACGCATAAATGATGCAAGTGCCTTAGTTTCTGTTCGAAAACCATTACACGTCTCTTTGATTGATAAGCAGAGAAAAATTCAGATGTTCAATCTTCTGAATGGATTCAACGAGTCCTTGTTTCCCTGTCACTCCCCGAAGCTGAAGTGCTTGCTTTCCAATAGCAAATTGAAAATTCCTGTCTCCCTTCAAATCAGGTCAGATGTGCAAGAATCTGAAGCTGTTGGCATTCCGGAGCATATCCAAATTGCTCCAGAAATCCCTCCAACGTGCTCAGATCCTCTTGGTGATGACGAAAATATTGGGGAGTTTGATGCTGTTGAATTTGATGCTGTTGAATCTGAAGCTGTTGAATCTCAAGCAACTGCTCCAGAAACCCCTCCGCGGTGCCCGGTAGCTAATGTCAGAATAGCTAAGCACACAGAGAGACCGATCTCCCCAAATAGTGATAACATGGTCGAAGAGGAAATGTTTTCATGTGAAACTGAGAATTCAAATATGTCCGGGTGGTCTGAGCAAACCAGTAAGGTTGCAACCTACTTGAGCAAACAAAAGGAGCCGGGTTCTGTAAACCTTTCAAAACTTTCAGAAGGACGAACCAGAAAAGAATCTGCAAGACTATTTTATGAAATGCTGGTTTTGAAAACTACCAATTATGTGGATGTGCAACAAAAGGAGGCTTATGGTGATATTGAAGTTAGGAAACTCCCGAAATTTGATAAAACTTTCGGAGTTTGA 1617 0.3958 MLKSKEPPLCSCKNPLWVAAFFFKQLKKAQIIDADISSAVDKIMHYEMDAVSYRILAYLLLGVVKTYSKKVEYLLNDCNNVLGGINKFVINKKNNAPVEAVCMAFTMPDTFDLDALDLGELEDTSGYHTAPPEQITLKEVLSNAGGFAQFSQERFEDFDMQFEGFCLGETSCSRDHAMAENILQFQPMDFDFEAFPSNSLNNLIEESSETLLEEFHKKVSFEEGTSSVNPSEPTIPDETPQSKFHGGSIAKPGATKSDFLLIPTPDAMECAHFSRKRKFKIDKTTTLSSEILRQRINDASALVSVRKPLHVSLIDKQRKIQMFNLLNGFNESLFPCHSPKLKCLLSNSKLKIPVSLQIRSDVQESEAVGIPEHIQIAPEIPPTCSDPLGDDENIGEFDAVEFDAVESEAVESQATAPETPPRCPVANVRIAKHTERPISPNSDNMVEEEMFSCETENSNMSGWSEQTSKVATYLSKQKEPGSVNLSKLSEGRTRKESARLFYEMLVLKTTNYVDVQQKEAYGDIEVRKLPKFDKTFGV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00692 538 Gene3D Structural maintenance of chromosome 1. Chain E 444 536 IPR023093 -
Trre13g00692 538 MobiDBLite consensus disorder prediction 222 238 - -
Trre13g00692 538 SUPERFAMILY "Winged helix" DNA-binding domain 472 532 IPR036390 -
Trre13g00692 538 Pfam N terminus of Rad21 / Rec8 like protein 16 93 IPR006910 GO:0005515
Trre13g00692 538 CDD Rad21_Rec8_M_AtSYN1-like 274 351 - -
Trre13g00692 538 MobiDBLite consensus disorder prediction 222 251 - -
Trre13g00692 538 Pfam Conserved region of Rad21 / Rec8 like protein 479 532 IPR006909 -
Trre13g00692 538 PANTHER SCC1 / RAD21 FAMILY MEMBER 16 535 IPR039781 GO:0007062|GO:0008278
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00692 Trre-Chr13 5355586 5359965 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00692 K06670 - gmx:100810733 316.235