Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00691 ATGTCTTCCTCTGCAAAAGATGATAATCCAAGATCTGTTAAAAGAGTTGCTGTTGTTGGTGCTGGGGTAAGTGGGCTTGCTGCGGCTTACAAATTGAAATCACATGGTCTAGATGTAACTGTTTTTGAAGCTGAAGGAAGAGCTGGAGGGAGGCTAAGAACTGTTTCTCGAGATGGGCTAGTTTGGGATGAGGGGGCTAATACAATGACTGAAAGTGAAATAGAGGTTAAAGGTTTGATTGATGCTCTTGGACTTCAAGAAAAACAACAATATCCATTGTCACAGCATAAGCGCTATATTGTAAAAAATGGGGAACCAGTTCTGGTACCTACAAATCCTGCTGCACTACTGAAGAGCAAACTGCTTTCTGCACAATCAAAGATTCGGGTCATTTTTGAACCATTTATGTGGAAAAGAAGTGACTCCTCTACCGTGTGTGATGAAAATTCTGAAGAAAGTGTTAGCAGATTCTTCGAACGTCATTTTGGGAAAGAGGTTGTGGACTATCTCATTGATCCTTTTGTTGGAGGTACAAGTGCAGCAGATCCTGAATCTCTTTCTGCGCGCCATTCTTTCCCAGAGCTATGGAATTTGGAGAAAAGGTATGGCTCCATTATAGCAGGGGCTTTACAATCCAGCTTATTTGGCAAAAGGGACAAAACTGGAGAAACTAAAGATAGACCAAGAAAAAACAAGAACCAGCGTGGTTCATTTTCTTTTCAGGGTGGGATGCAGACACTGACTGATACATTGTGCAAAGAGCTTGGCAAAGATGACCTTAAATTAAATGCGAAGGTTTTGACACTAGCTTACAGTCATGATGGAAGTTCCCCATCGCAAAACTGGTCTATTACTTGTGCTTCTAACAAAAAAACACAAGATGTTGATGCAGTAATTATAACGGCTCCTCTTGATAATGTCAAAGACATCCGGATCATGAAAAGGGGAGCCCCCTTTGCACTTAATTTTCTTCCTGAGGTGACCTATTTACCACTCTCAGTCTTAATTACCACCTTTAAAAAGGAGAATGTAAAGAGACCTCTGGAGGGATTTGGAGTTCTTGTTCCTTCAAAAGAGCAACAAAACGGTTTAAAAACCCTTGGTACACTTTTTTCCTCTATGATGTTTCCAGATCGAGCACCCAGTGATATGCATCTCTATACCACCTTCATAGGGGGAACTCGGAACAGGGAGCTCGCTCGAGCTTCAACTGATGAGCTTAAGAATATTGTCACGTCTGACCTGAGAAAGTTGTTGGGAGCAGAGGGAGAGCCCACATTCGTCAACCATTTCTTCTGGAGTAAAGGCTTTCCTTTGTATGGTCATAACTATGGCTCAGTTCTTGAAGCAATTGACAAGATGGAAAAAGGTCTTCCTGGATTTTACTATGCAGGTAACCACAGAGGTGGACTCTCAGTTGGTAGAGCAATTGCCTCAGGTTGCAAAGCAGCTGATCTTGTAATTTCCTACCTCAACAATGCTTCAGACAAAACAGTGTCTGATAAATGA 1509 0.4188 MSSSAKDDNPRSVKRVAVVGAGVSGLAAAYKLKSHGLDVTVFEAEGRAGGRLRTVSRDGLVWDEGANTMTESEIEVKGLIDALGLQEKQQYPLSQHKRYIVKNGEPVLVPTNPAALLKSKLLSAQSKIRVIFEPFMWKRSDSSTVCDENSEESVSRFFERHFGKEVVDYLIDPFVGGTSAADPESLSARHSFPELWNLEKRYGSIIAGALQSSLFGKRDKTGETKDRPRKNKNQRGSFSFQGGMQTLTDTLCKELGKDDLKLNAKVLTLAYSHDGSSPSQNWSITCASNKKTQDVDAVIITAPLDNVKDIRIMKRGAPFALNFLPEVTYLPLSVLITTFKKENVKRPLEGFGVLVPSKEQQNGLKTLGTLFSSMMFPDRAPSDMHLYTTFIGGTRNRELARASTDELKNIVTSDLRKLLGAEGEPTFVNHFFWSKGFPLYGHNYGSVLEAIDKMEKGLPGFYYAGNHRGGLSVGRAIASGCKAADLVISYLNNASDKTVSDK 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00691 502 NCBIfam protoporphyrinogen oxidase 14 492 IPR004572 GO:0004729|GO:0006779
Trre13g00691 502 Gene3D Protoporphyrinogen oxidase, mitochondrial; domain 2 51 440 - -
Trre13g00691 502 Gene3D - 15 484 IPR036188 -
Trre13g00691 502 FunFam Protoporphyrinogen oxidase 109 215 - -
Trre13g00691 502 Pfam Flavin containing amine oxidoreductase 23 488 IPR002937 GO:0016491
Trre13g00691 502 MobiDBLite consensus disorder prediction 218 233 - -
Trre13g00691 502 PRINTS Adrenodoxin reductase family signature 38 51 - -
Trre13g00691 502 PRINTS Adrenodoxin reductase family signature 15 37 - -
Trre13g00691 502 SUPERFAMILY FAD/NAD(P)-binding domain 14 491 IPR036188 -
Trre13g00691 502 PANTHER PROTOPORPHYRINOGEN OXIDASE 13 498 - -
Trre13g00691 502 SUPERFAMILY FAD-linked reductases, C-terminal domain 329 438 - -
Trre13g00691 502 Gene3D protoporphyrinogen ix oxidase, domain 3 109 226 - -
Trre13g00691 502 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00691 Trre-Chr13 5341982 5350724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00691 K00231 - gmx:547941 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00691 13 5341982 5350724 Trre13g00691 13 5341982 5350724 ECH