Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00679 ATGACCGTGGTTATGACATTTCGTAAAGTCACCTCCATGCAGTCAATTTATCGTGTTGTTGTTCGTGATCCCTCTTGTGTATGTTGTCTGCCTCTTGCTTCTAGAACTTTGTTTTCTTCTTTAGCAACTTGTCACGATGTAGAAGGTAGAGACTTTCGGTATCGAGAACAATCTCAAGACCTGACAAGATCTGTGGACATTCTTACTTCAAAAATTGGCAAAGGAAACAGCGAAGAAGATATTCTCCGGTCTTTAATCAGTGATGAAGATGTAAATGGTATTTGTCTGTCTCAAAACCTTATTAACAGGTTGCTATGTCGATATAAGGATGATTGGAAGTCTGCATTGGGGATATTCAAATGGGCTGGTTTTCATTCAAACTTTAAACATTCGCAAGAGTCGTATGATATGATGGTAGATATATTGGGTAGAATGAAGGCAATGGAAAAGATGAGAGAGATCTTAGAAGAAATGCGTCAGGAGAGTCTCATCACTCTCGATACTATAGCTAAGGTAATGAGAAGGTTTGCCGGGGCAAGACAGTGGAAAGATGCTGTGTGGATATTTGATGACTTACAGATTTTCGGCTTGGAGAAGAATACGGAATCCATGAATGTGTTGCTTGATACTCTATGCAAAGAGAAATTTGTTGAGCAAGCTCGTGAAATTTACGTGGAGCTGAAGCATTACATTGCTCCAAACGCTCACACGTTTAACATATTTATTCATGGATGGTGTAAAATCCGACGTGTTGAGGAGGCACATTGGACTATCCAAGAGATGAAAGGATATGGTTGTCGCCCTTGTGTTATAAGTTATTCCACCATCATCCAATGTTATTGTCAAGAACAGAATTTCGACAGGGTTTACGAACTTCTCGATGAAATGCAAGCTCAAAATTGCCCCCCCAATGTGGTCACTTATACTATTATCATGTGTGCGCTGGCAAAAGCAGAAAAAATCGACGAAGCTTTTCAACTAGTTGAGAGAATGAACTCTACTGGATGTAAGCCTGATACACTTTTTTACAATTCGTTGATTTATACGTTGGGGAGAGCAGGCAGAATAGACGACGCTATGCATGTATTCAAGGTTGCGATGCCGAAGGCCGGTGTAGCCCCAAATACGTCGACATATAATTCAATGATTTCTATGTTTTGTTTCTATGGACAAGAAGAGAGAGCTTTTGCCATACTGAAGGAGATGGAAGATTCAGGTCTATATAGATGTAAGTGGGCGTTCGTTCTGTTCGAGGAGATGGTTGATCAAGATATCGTGCCTAGATACCGAACTTGCCGTTTGCTCTTGGATGAAGTCAATAGGAAAAATATGTATGAAGCTGCTGAGAAAATTGAAATACTTATGAAGAAACTTTAA 1377 0.3994 MTVVMTFRKVTSMQSIYRVVVRDPSCVCCLPLASRTLFSSLATCHDVEGRDFRYREQSQDLTRSVDILTSKIGKGNSEEDILRSLISDEDVNGICLSQNLINRLLCRYKDDWKSALGIFKWAGFHSNFKHSQESYDMMVDILGRMKAMEKMREILEEMRQESLITLDTIAKVMRRFAGARQWKDAVWIFDDLQIFGLEKNTESMNVLLDTLCKEKFVEQAREIYVELKHYIAPNAHTFNIFIHGWCKIRRVEEAHWTIQEMKGYGCRPCVISYSTIIQCYCQEQNFDRVYELLDEMQAQNCPPNVVTYTIIMCALAKAEKIDEAFQLVERMNSTGCKPDTLFYNSLIYTLGRAGRIDDAMHVFKVAMPKAGVAPNTSTYNSMISMFCFYGQEERAFAILKEMEDSGLYRCKWAFVLFEEMVDQDIVPRYRTCRLLLDEVNRKNMYEAAEKIEILMKKL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00679 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 374 IPR002885 -
Trre13g00679 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Trre13g00679 458 NCBIfam pentatricopeptide repeat 271 305 IPR002885 -
Trre13g00679 458 NCBIfam pentatricopeptide repeat 236 268 IPR002885 -
Trre13g00679 458 NCBIfam pentatricopeptide repeat 306 340 IPR002885 -
Trre13g00679 458 NCBIfam pentatricopeptide repeat 343 376 IPR002885 -
Trre13g00679 458 NCBIfam pentatricopeptide repeat 378 408 IPR002885 -
Trre13g00679 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Trre13g00679 458 Pfam PPR repeat family 199 247 IPR002885 -
Trre13g00679 458 Pfam PPR repeat family 338 387 IPR002885 -
Trre13g00679 458 Pfam PPR repeat family 268 317 IPR002885 -
Trre13g00679 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Trre13g00679 458 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Trre13g00679 458 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 50 451 - -
Trre13g00679 458 Pfam PPR repeat 134 161 IPR002885 -
Trre13g00679 458 Gene3D Tetratricopeptide repeat domain 69 216 IPR011990 GO:0005515
Trre13g00679 458 Gene3D Tetratricopeptide repeat domain 317 411 IPR011990 GO:0005515
Trre13g00679 458 Gene3D Tetratricopeptide repeat domain 217 316 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00679 Trre-Chr13 5281102 5282643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00679 273 458 Miscellaneous Gene Families AT4G11690 24.051 4.42e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00679 - - cam:101498834 616.69