Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00663 ATGACTAATAGAAAAGCATTACCAGTTCGAAATTTTGGTAGTGACTTTAGCATTAGTTACAATAATTCTCGATCAGAAAAGATGAGAATTATTGAATTGTTACCACCCTCCGATGGCAACGGTTCTTCAAAAGAAGAAGAACCTTTACCTCAGGATGCAGATTATAATCTAAGTCTCAGCGACGAGCTAGAGACTTCGATCTTTGCGAGATTTCCAAGATCATTACACTGGAAACTATGTTTTCTAAACAAGAGATTCTTGACTCTAATGGAAAGCGGCGAAATCTACAAGATAAGGAAGGAGTTTGGACTCAAAGAACCGTCGGTTTTCATGTTAGCTAGCGGGGAAAGCAATTGGTGGGGTATGGATTGGCCTTTCAAATCAAGCAGGAAACTTCCGAGGATTCAATCAGATTACAGCTTTGAATTTGGTGATAAAGAGTCATTTTCTGCAGGGTCACAGTTATTGGTTTCGGGCAAAGAACTCGATGGAGCTGTTATTTGGAGGTACGATTCGGAAACTAATGAATGGTTTAAAGGACCATTCATGATTAATCCAAGGTGTTTATTTGCTTCTGCTAGTTCTGGTAATTTTGCTTTTGTTGCCGGTGGATTAGAAACAAACACTTATAGCGAAATATTGGATACTGCTGAGAAATATGATTCGAAAAGCAAAACTTGGAAACCGTTACCGAAGATGAATATAAAGAGAAAGTTTTGTTCAGGTTGTTATATGGATAAGAGATTCTATGTTATTGGTGGGCAAGACGAGAACAAAAAGGATCTTACTTGCGGAGAGTTTTTCGACGAGGAGACAAATACATGGAACTTGATTCCTAATATGTTGAAAGATATTCCGCTTTTGGTTTCGATTTCGCCGTCTCCGCCTCTAATAGCTGTTGTTAATAATGAGCTTTACACACTCGATGCTTCTTCTAATGAGTTGAAAGTTTACATCAAAGGAATGAATAAGTGGAAGAAGTTAGGTGTTGTTCCGGTTAGAGCCGATGAACAAGGTGGTTGGGGTGTTGCATTTAAATCACTTGGTGATCAGTTACTTGTTATCGGTGCGCGTTCGGTTTCTCATAAAGAACGCGCTTTGGCAATTTATACTTGTTGTCCTGATCCTGAAGGTGAGAGATTGAAATGGAAGCAAATTGATTGTGGGAGTGTTCAGCTTAATCTTAATCATTTCATTAGGAACTGTGCTGTTATGATGGGAAGTTCTTGA 1230 0.3878 MTNRKALPVRNFGSDFSISYNNSRSEKMRIIELLPPSDGNGSSKEEEPLPQDADYNLSLSDELETSIFARFPRSLHWKLCFLNKRFLTLMESGEIYKIRKEFGLKEPSVFMLASGESNWWGMDWPFKSSRKLPRIQSDYSFEFGDKESFSAGSQLLVSGKELDGAVIWRYDSETNEWFKGPFMINPRCLFASASSGNFAFVAGGLETNTYSEILDTAEKYDSKSKTWKPLPKMNIKRKFCSGCYMDKRFYVIGGQDENKKDLTCGEFFDEETNTWNLIPNMLKDIPLLVSISPSPPLIAVVNNELYTLDASSNELKVYIKGMNKWKKLGVVPVRADEQGGWGVAFKSLGDQLLVIGARSVSHKERALAIYTCCPDPEGERLKWKQIDCGSVQLNLNHFIRNCAVMMGSS 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00663 409 SMART kelc_smart 154 197 IPR006652 GO:0005515
Trre13g00663 409 SMART kelc_smart 248 303 IPR006652 GO:0005515
Trre13g00663 409 SMART kelc_smart 200 247 IPR006652 GO:0005515
Trre13g00663 409 SUPERFAMILY Kelch motif 150 362 IPR015915 GO:0005515
Trre13g00663 409 FunFam F-box/kelch-repeat protein SKIP11 101 388 - -
Trre13g00663 409 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 57 405 - -
Trre13g00663 409 Pfam Kelch motif 237 281 IPR006652 GO:0005515
Trre13g00663 409 Pfam Kelch motif 186 234 IPR006652 GO:0005515
Trre13g00663 409 Gene3D - 113 387 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00663 Trre-Chr13 5182887 5184116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre13g00663 57 278 Miscellaneous Gene Families AT4G33900 25.991 3.24e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00663 - - aprc:113863834 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00663 13 5182887 5184116 Trre13g00663 13 5182887 5184116 ECH