Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00581 ATGGGTAGCACATTCAATCCGCAGATTTTAGTGGAAAAACTAGCCAAGCTGAATAGCTCGCAGACAAGCATAGAGACTTTGTCACATTGGTGCATATTTCATATGAACAAAGCCAAACTAGTTGTTGAAACATGGGCAAAACAGTTCCATTGCTCTCCTCGTGAGAAGAAATTGGCATTTCTGTTTCTTGCAAATGATATTTTACAAAACAGCAGGCGAAAGGGTTCTGAGTTTGTAGGTGAATTTTGGAAGGTTCTTCCAGATGCCCTTCGAGATGTCATTCAAAATGGAGACGACTATGCAAGGAATCAAGCAATGCGACTGGTTGGTATATGGGAAGAAAGAAAAGTTTTTGGTTCTCGTGGTCAAATTCTCAAGGAAGAAATTGCTGGGAGGCATGCGGAAAACAATAACCGTGATGCGAAACCTATGAGTGTGAAACCTACAAATGTGAAACCTATGAATGTGAAACTGAGACCATCTGCTGGGAATGCATTGGATAAGATAGCTTCTGGCTATCATCATATTTATGGAGGACAAACAGATGAAGATGCTGTATTAAGCAAATGCAGGAATGCCATTAGCTCTCTTGAGAAAGCAGATAATGATAGTAATTCAGGGAACCTCCATGGATCTGCAGTAGTGAATGAGCTCCAGGGGCATAATGCCATACTAAAGGACTGCATTGAGCAGTTAACAGCCATAGAATCATCAAGAGCTGGCCTTGTATCTCACCTGAGAGAGGCACTTCAGGATCAGGAATTCAAGCTGGATCAAGTCCGTAGCCAAATTCAGGCTGCGCGTGTTCAGTGGGAACATGCGAACAATACTTGCCAACAATTACTGAATGGCAACAATATTCAGTCATTAGTTGAACAGAGCTCAAAGGAAATTCAAACCTCCGTGATACCTGGAAGTTTTATCTCTGGTGGGGAGCAATCAGCCCCATTAAGGTATGCACCACAAGGGGTGTATTATCAAAATTCTGGACATAGCGAAGAAGATCCGCGCAAGTCTGCAGCCGCGTCTGCAGCCGCCGCAGTGGCAGCTAAGCTTACTGCATCCACATCGTCTATCCAGATGCTGTCTTGTGTGTTATCCTCTTTTGCAGCATCAGAAGGTGTCATAGGCAATCCGATGACAGAGTCTTCTGCTGAATTTCACTCCGAAAAGAGGACTAAGCTTGAAAATGGCCAGCCATCTTACGTGCCATCTCAGAATCCTCAACAACCTCTTCCCCCCTTTTCATTTTCTGAAACTACCCAACACAATGCATCTACATCCAACGAGCAGTATACTCCAAATGAACAGTATACTCCAAATGATCAGCCACCACCTCCACCCTCATCATCACCACCCCCATTACCCCCGCTGCCACCAACACCTCAACAATACCCGGTGCCGCCGTTCATGCAGAATGTTGGATCCGCTAACAATATGGCATACAACTATGGCGTGATGCAACAACAGCCATCAATGGCAACCTATCCTGCTGTTGGGGTTGCCATGAACAATGTTTCTCCTTTTACACCTCCTATGAATGCTTATCAGGGTTTTCAGGGTTCTGATGGAAATTACTATAACCAGTCTTCGGTGCCTGTCGTCCCCATCTCTCGCCAGTAA 1623 0.4479 MGSTFNPQILVEKLAKLNSSQTSIETLSHWCIFHMNKAKLVVETWAKQFHCSPREKKLAFLFLANDILQNSRRKGSEFVGEFWKVLPDALRDVIQNGDDYARNQAMRLVGIWEERKVFGSRGQILKEEIAGRHAENNNRDAKPMSVKPTNVKPMNVKLRPSAGNALDKIASGYHHIYGGQTDEDAVLSKCRNAISSLEKADNDSNSGNLHGSAVVNELQGHNAILKDCIEQLTAIESSRAGLVSHLREALQDQEFKLDQVRSQIQAARVQWEHANNTCQQLLNGNNIQSLVEQSSKEIQTSVIPGSFISGGEQSAPLRYAPQGVYYQNSGHSEEDPRKSAAASAAAAVAAKLTASTSSIQMLSCVLSSFAASEGVIGNPMTESSAEFHSEKRTKLENGQPSYVPSQNPQQPLPPFSFSETTQHNASTSNEQYTPNEQYTPNDQPPPPPSSSPPPLPPLPPTPQQYPVPPFMQNVGSANNMAYNYGVMQQQPSMATYPAVGVAMNNVSPFTPPMNAYQGFQGSDGNYYNQSSVPVVPISRQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00581 540 SMART 558neu5 9 130 IPR006569 -
Trre13g00581 540 MobiDBLite consensus disorder prediction 381 470 - -
Trre13g00581 540 Pfam CID domain 9 120 IPR006569 -
Trre13g00581 540 PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN 1 513 - -
Trre13g00581 540 SUPERFAMILY ENTH/VHS domain 11 117 IPR008942 -
Trre13g00581 540 MobiDBLite consensus disorder prediction 412 438 - -
Trre13g00581 540 MobiDBLite consensus disorder prediction 439 467 - -
Trre13g00581 540 Coils Coil 243 270 - -
Trre13g00581 540 ProSiteProfiles CID domain profile. 2 134 IPR006569 -
Trre13g00581 540 MobiDBLite consensus disorder prediction 132 153 - -
Trre13g00581 540 Gene3D - 2 130 IPR008942 -
Trre13g00581 540 CDD CID_RPRD_like 7 129 - -
Trre13g00581 540 FunFam ENTH/VHS family protein isoform 1 2 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00581 Trre-Chr13 4520219 4524355 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00581 K15559 - gmx:100806108 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00581 13 4520219 4524355 Trre13g00581 13 4520219 4524355 ECH