Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre13g00162 ATGTATCAGGGTGGTTATACTGCTGAAATTACAAACTTATCTCCAAGAGCTACAGAAAATGATGTGCACAATTTTTTTGGATACTGTGGTGTAATTGAGCGTGTCGATGTAATAAGATCCAGTGATTATGAGTCTATTGCATATGTGACTTTTAAGGATGCTTATGCCCTGGACACTGCATTATTGCTGAATGGATCCATGATTTTGGACACATGCATTTCCATTTCGCGCTGGGAAACTTATACAGATGACAATAATAATTGGAACAGTCATACATCAAACCATGAAGACAGTATTACATACTCACAAGATAAGTTTGTATCTTCCCCTGGTGAAGCACTGATTATGGCTCAACAAGTTGTCAAAACAATGGTAGCGAAAGGATATGTTCTGAGCAAAGATGCATTTGTGATGGCAAAAGCTTTTGACGAATCGCGCAATGTATCTTCATCAGCAGCAACCAAGGTTGCTGAACTCAGCAACAAAATTGGATTGACTGAAACCATAAATTCAGGCATTGAAACTTTTAAATCTGTGGATGAGAAGTATCATGTTACAGATATCACCAAATCAGCCGCAACGGTAACTGGGACGACAGCTATAGTAGTAGCGACGGTTACAGGGAGAGCAGCTGTTGCTGCTAGTAATGCTATAGTCAATAGCAGCTACTTTGCAAAAGGAGCTCTTTGGGTTTCTGATATGTTATCTCGTGCCGCGAAATCAGCTGCCGATTTGGGCCATCATCAAAACAATTGA 756 0.4008 MYQGGYTAEITNLSPRATENDVHNFFGYCGVIERVDVIRSSDYESIAYVTFKDAYALDTALLLNGSMILDTCISISRWETYTDDNNNWNSHTSNHEDSITYSQDKFVSSPGEALIMAQQVVKTMVAKGYVLSKDAFVMAKAFDESRNVSSSAATKVAELSNKIGLTETINSGIETFKSVDEKYHVTDITKSAATVTGTTAIVVATVTGRAAVAASNAIVNSSYFAKGALWVSDMLSRAAKSAADLGHHQNN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre13g00162 251 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 6 247 - -
Trre13g00162 251 Gene3D - 3 88 IPR012677 -
Trre13g00162 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Trre13g00162 251 SUPERFAMILY RNA-binding domain, RBD 6 79 IPR035979 GO:0003676
Trre13g00162 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 73 IPR000504 GO:0003723
Trre13g00162 251 SMART rrm1_1 7 76 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre13g00162 Trre-Chr13 1279891 1281969 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre13g00162 - - psat:127128539 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g00162 13 1279891 1281969 Trre13g00162 13 1279891 1281969 ECH