Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04897 ATGGTTCTCGCACAATTAGGAGGGAGCATTACTCGTGCTCTTCAGCAGATGAGCAATGCAACAGTGATCGATGAGAAAGCCCTCAACGATTGTCTCAACGAAATCACTCGAGCTCTCCTTCAATCCGATGTTCAATTCAATCTCGTTCGAGACATGCAAACCAATATCAAGAAGATTGTTAATCTTGAAGATCTCGCCGCCGGTCACAACAAACGCAAAATCATTCAACAAGCTGTGTTTAACGAACTCTGCAAAATGTTGGATCCTGGAAAATCCTCTTTTGTTCCCAAAAAAGGAAAATCAAGTGTTGTCATGTTTGTTGGATTACAAGGTTCTGGAAAAACTACGACGTGTACAAAATATGCACATTATTATCAGAAGAAAGGATGGAAGCCGGCTTTAGTTTGTGCAGATACATTTAGAGCGGGTGCATTTGATCAATTGAAGCAAAATGCTACTAAAGCTAAAATCCCTTTTTATGGAAGCTATATGGAATCAGATCCTGTCAAAATTGCCGTGGAAGGTGTGGAGAGATTCAAGGAAGAAAACCATGATCTTATAATTGTTGATACCAGCGGGCGGCATAAACAAGAAGCAGCTCTTTTTGAAGAAATGCGTCAAGTTTCGGAAGCAACGAAACCAGATCTAGTTATATTTGTCATGGATAGTAGTATTGGTCAGGCTGCTTTTGATCAGGCCCAAGCATTTAAACAGAGTGTTGCCGTTGGAGCTGTAATTATTACCAAAATGGATGGCCATGCCAAGGGTGGTGGTTCTCTTAGCGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATAGGAACTGGTGAACATATGGATGAGTTTGAAGTTTTTGAAGTTAAGCCATTTGTTAGTCGTCTATTAGGCATGGGGGACTTGTCTGGGTTTGTGGAAAAAATACATGACATTGTTCCTATGGATAAACAGCCTGAATTGCTTCAAAAGCTGTCAGAAGGCTTCACCTTGAGGATTATGTATGAGCTATTTCAGAACATGCTTAGTATGGGTCCTATGAGTCAGGTCTTTTCTATGCTTCCAGGATTTAGTTCTGAGTTAATGCCAAAAGGCCAAGAGAAAGAAGGCCAGGCAAAAGTTAAGCGTTACATGACAATAATGGATTCAATGACAAATGAAGAGTTGGATAGTTCAAACCCAAAGCTCATGAAAGAATCACGTATGATGCGAATAGCTCGAGGTTCTGGTCGTCTAGTTAGGGAAGTGTTGGAGATGATGGAAGAGTACAAACGTCTTGCAAAGATAATGAAAGGGCTTAAAATACCAAAGAATGGTGACATGAGTGCCCTATCTCGAAATATCCCTCCACAGATGCTGAGGCAATTTGATCGCATGGGCGGGTTACAAAACTTAATGAGGCAGATGCCCAGGACTTAA 1413 0.4119 MVLAQLGGSITRALQQMSNATVIDEKALNDCLNEITRALLQSDVQFNLVRDMQTNIKKIVNLEDLAAGHNKRKIIQQAVFNELCKMLDPGKSSFVPKKGKSSVVMFVGLQGSGKTTTCTKYAHYYQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKEENHDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIITKMDGHAKGGGSLSAVAATKSPVIFIGTGEHMDEFEVFEVKPFVSRLLGMGDLSGFVEKIHDIVPMDKQPELLQKLSEGFTLRIMYELFQNMLSMGPMSQVFSMLPGFSSELMPKGQEKEGQAKVKRYMTIMDSMTNEELDSSNPKLMKESRMMRIARGSGRLVREVLEMMEEYKRLAKIMKGLKIPKNGDMSALSRNIPPQMLRQFDRMGGLQNLMRQMPRT 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04897 470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 96 298 IPR027417 -
Trre11g04897 470 Gene3D - 91 285 IPR027417 -
Trre11g04897 470 FunFam Signal recognition particle GTPase 5 98 - -
Trre11g04897 470 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Trre11g04897 470 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 464 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Trre11g04897 470 Gene3D - 5 306 IPR042101 -
Trre11g04897 470 SUPERFAMILY Signal peptide-binding domain 298 431 IPR036891 GO:0006614|GO:0008312|GO:0048500
Trre11g04897 470 Pfam Signal peptide binding domain 327 428 IPR004125 GO:0006614|GO:0008312|GO:0048500
Trre11g04897 470 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Trre11g04897 470 NCBIfam signal recognition particle protein SRP54 2 426 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Trre11g04897 470 CDD SRP54_G 102 294 - -
Trre11g04897 470 FunFam Signal recognition particle 54 kDa subunit 91 285 - -
Trre11g04897 470 Gene3D - 311 447 IPR036891 GO:0006614|GO:0008312|GO:0048500
Trre11g04897 470 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Trre11g04897 470 SMART AAA_5 100 277 IPR003593 GO:0016887
Trre11g04897 470 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Trre11g04897 470 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 468 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Trre11g04897 470 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Trre11g04897 470 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Trre11g04897 470 FunFam Signal recognition particle 54 kDa protein 311 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04897 Trre-Chr11 59857803 59861301 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04897 K03106 - rcu:8282364 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04897 11 59857803 59861301 Trre11g04897 11 59857803 59861301 ECH
Trre11g04897 11 59857803 59861301 Trre7g00183 7 1309572 1314048 PCT