Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04526 ATGGATCCAAATGAACTCAAACGTGTTTTTCAAATGTTTGATCGTAACGACGATGGCCGGATAACAAAAAAGGAGCTGAATGATTCCTTGGAGAATTTAGGAATATTCATTCCAGACAAAGAGTTAAGTCAAATGATCGAGAAGATCGATGTTAACCGAGACGGATGTGTTGATATTGAGGAATTTAAAGAGTTGTATGAGTCTATTATGGATGAACGTGTTGAAGATGAGGAAGAAGATATGAGGGAAGCATTCAATGTGTTTGATCAAAATGGAGATGGGTTTATTAGTGTTGATGAGTTGAGATCTGTTTTGGTGTCTTTGGGATTGAAACAAGGAAGAACTGTTGAAGATTGTAAGAAAATGATTGGAAATGTTGATGTTGATGGAAATGGTTTGGTTGATTATAAGGAGTTTAAGCAAATGATGAAGGGTGGTGGTTTATCTGCTCTCAGTTAG 459 0.3638 MDPNELKRVFQMFDRNDDGRITKKELNDSLENLGIFIPDKELSQMIEKIDVNRDGCVDIEEFKELYESIMDERVEDEEEDMREAFNVFDQNGDGFISVDELRSVLVSLGLKQGRTVEDCKKMIGNVDVDGNGLVDYKEFKQMMKGGGLSALS 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04526 152 FunFam Calmodulin-like protein 3 1 70 - -
Trre11g04526 152 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Trre11g04526 152 Pfam EF-hand domain pair 5 67 IPR002048 GO:0005509
Trre11g04526 152 Pfam EF-hand domain pair 78 144 IPR002048 GO:0005509
Trre11g04526 152 Gene3D - 2 70 - -
Trre11g04526 152 ProSiteProfiles EF-hand calcium-binding domain profile. 114 149 IPR002048 GO:0005509
Trre11g04526 152 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Trre11g04526 152 ProSiteProfiles EF-hand calcium-binding domain profile. 1 36 IPR002048 GO:0005509
Trre11g04526 152 FunFam calmodulin-like protein 3 74 147 - -
Trre11g04526 152 ProSiteProfiles EF-hand calcium-binding domain profile. 37 72 IPR002048 GO:0005509
Trre11g04526 152 ProSitePatterns EF-hand calcium-binding domain. 14 26 IPR018247 -
Trre11g04526 152 SMART efh_1 41 69 IPR002048 GO:0005509
Trre11g04526 152 SMART efh_1 80 108 IPR002048 GO:0005509
Trre11g04526 152 SMART efh_1 118 146 IPR002048 GO:0005509
Trre11g04526 152 SMART efh_1 5 33 IPR002048 GO:0005509
Trre11g04526 152 CDD EFh 82 144 IPR002048 GO:0005509
Trre11g04526 152 Coils Coil 59 79 - -
Trre11g04526 152 ProSitePatterns EF-hand calcium-binding domain. 127 139 IPR018247 -
Trre11g04526 152 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 78 144 - -
Trre11g04526 152 ProSitePatterns EF-hand calcium-binding domain. 50 62 IPR018247 -
Trre11g04526 152 Gene3D - 71 146 - -
Trre11g04526 152 SUPERFAMILY EF-hand 4 145 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04526 Trre-Chr11 57417820 57418278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04526 1 150 EF-hand Containing Proteins AT2G43290 71.895 2.73e-76 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04526 K13448 - zju:107422102 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04526 11 57417820 57418278 Trre11g04526 11 57417820 57418278 ECH
Trre11g04526 11 57417820 57418278 Trre7g03033 7 27549122 27549574 PCT