Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04406 ATGGCATCCTCTCAAGCAAGCCTTCTCCTTCAAAAACAGCTCAAAGATCTTTGTAAACATCCTGTTGATGGCTTTTCCGCTGGTTTGGTTGATGAAACCAACATTTTTGAATGGAGTGTAACCATAATTGGACCACCAGATACTCTTTATGAGGGAGGATTTTTCAATGCCATTATGAGCTTTCCGCCCAACTACCCTAACAGTCCACCATCAGTGAAATTCACCTCAGATATATGGCATCCCAATGTATATCCTGATGGGCGGGTTTGCATATCTATTCTTCATCCTCCTGGGGATGACCCAAATGGTTACGAGCTTGCAAGTGAGCGCTGGACACCTGTTCATACAGTAGAGAGTATAGTGTTGAGTATCATTTCGATGCTTTCTGGTCCTAATGATGAATCTCCAGCAAATGTTGAAGCTGCGAAGGAGTGGAGAGACAGGAGAGATGATTTCAAGAAAAAGGTTAGCCGTTGTGTGCGGAAGTCACAGGAAATGTTGTGA 504 0.4365 MASSQASLLLQKQLKDLCKHPVDGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPPNYPNSPPSVKFTSDIWHPNVYPDGRVCISILHPPGDDPNGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDRRDDFKKKVSRCVRKSQEML 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04406 167 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 79 94 IPR023313 -
Trre11g04406 167 Gene3D Ubiquitin Conjugating Enzyme 1 167 IPR016135 -
Trre11g04406 167 SUPERFAMILY UBC-like 4 163 IPR016135 -
Trre11g04406 167 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 165 IPR000608 -
Trre11g04406 167 CDD UBCc 18 160 IPR000608 -
Trre11g04406 167 FunFam ubiquitin-conjugating enzyme E2 7 3 167 - -
Trre11g04406 167 Pfam Ubiquitin-conjugating enzyme 10 159 IPR000608 -
Trre11g04406 167 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 4 164 - -
Trre11g04406 167 SMART ubc_7 8 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04406 Trre-Chr11 56424255 56427912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g04406 1 128 Miscellaneous Gene Families AT1G17280 30.147 1.58e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04406 K10575 - cave:132164361 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04406 11 56424255 56427912 Trre11g04406 11 56424255 56427912 ECH
Trre11g04406 11 56424255 56427912 Trre7g03301 7 32218372 32221167 PCT