Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g04276 ATGTACAAGAACCAGCTTCAAGAGCTGGCGCAGAGGAGCTGCTTCAATCTTCCTTCATACACTTGCATTCGTGAAGGTCCTGATCACGCTCCCAGGTTTAAAGCTACCGTTAACTTTAACGGCGAGATCTTCGAGAGTCCTCACTACTGTTCAACTCTCCGTCAAGCTGAACACTCCGCTGCAGAAGTTGCTCTCAATTCTCTCTCTCACCGTGGTCCTTCTCACTCTCTCGCCGCTAAGATTCTCGACGAGACTGGAGTCTACAAGAACCTCTTACAAGAAATTGCTCAACGAGTTGGGGCTCCATTGCCTCAGTACACAACATTCAGATCAGGCCTAGGACATTTACCTGTTTTTACTGGGATAGTAGAATTGGCTGGAATCACATTTACTGGTGAACCTGCCAAGAATAAGAAACAAGCCGAGAAGAATGCAGCTATGGCAGCTTGGTCATCTTTAAAGCAATTGGCAAAAGAGACTGCTAGTTCTTCAACTGAACCTGAGAACAATGATGAATTAGAACAGATCACTATAGCACGAGCTTTGCTGAACTACCGTCTGAAAGAAAAGATGGCAATGTTGAATCCAAATGCTCCGATTCCATTTCAGCAGAAGTTTCAGATTCAAAATATCAGGCCGACTAGTTCTCAACCTTCTGCCACCACATCAAAGATCCTTCCCTTAATTTGCCAAAAGGCAAGACCTCGATACAAACCTTCACCGGCAACAGCAAATGAAAATCCTCGAAGCAGGCATACGCCAGCAGCAGCAACCAATGACAAGTCTATGGTGCATCCGCCACAATCTTCTGCACTAGAAAGCCGGGTGACCCGTCCTCTGAGGTTCCCTGCAGCAGGAGCAGCACCTTATGTTCCCATTCGACAAATGAGATCACCTTGCCATGGGATTGCACCTCCTGTGGCTGTGAGGACCATAGTACCTGTGTTCTCTGCACCACCTCTGCCACCACCTGCCTCAGTCCATCAGGTTATACGGGCTCCTCCTGTACGAGTAGCTCCTCCGGTCAGTATTCGTCAAGCTGTTCCTGTATATGCCGCCCCACCACCAAGAAAAGAGGAACCTGCCCCTGTCCAAAAAGATCTACCTGCCAGTAATACCACTGTCGAGCAAGATAAGCTTCCAGCTAAAATTCTAGAGATGGACAAGACTGAGAACAACCCACATCAATCAGAGACTTTGCTGAGTTTGGATCAGCTGAAAATTTGA 1227 0.4743 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPHYCSTLRQAEHSAAEVALNSLSHRGPSHSLAAKILDETGVYKNLLQEIAQRVGAPLPQYTTFRSGLGHLPVFTGIVELAGITFTGEPAKNKKQAEKNAAMAAWSSLKQLAKETASSSTEPENNDELEQITIARALLNYRLKEKMAMLNPNAPIPFQQKFQIQNIRPTSSQPSATTSKILPLICQKARPRYKPSPATANENPRSRHTPAAATNDKSMVHPPQSSALESRVTRPLRFPAAGAAPYVPIRQMRSPCHGIAPPVAVRTIVPVFSAPPLPPPASVHQVIRAPPVRVAPPVSIRQAVPVYAAPPPRKEEPAPVQKDLPASNTTVEQDKLPAKILEMDKTENNPHQSETLLSLDQLKI 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g04276 408 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 87 155 IPR014720 -
Trre11g04276 408 CDD DSRM_AtDRB-like_rpt1 1 69 IPR044450 GO:0003725
Trre11g04276 408 SUPERFAMILY dsRNA-binding domain-like 2 68 - -
Trre11g04276 408 FunFam Double-stranded RNA-binding protein 2 1 70 - -
Trre11g04276 408 SMART DRBM_3 2 69 IPR014720 -
Trre11g04276 408 SMART DRBM_3 88 154 IPR014720 -
Trre11g04276 408 MobiDBLite consensus disorder prediction 236 274 - -
Trre11g04276 408 FunFam Double-stranded RNA-binding protein 2 84 155 - -
Trre11g04276 408 Gene3D - 2 83 - -
Trre11g04276 408 PANTHER - 1 356 - -
Trre11g04276 408 Pfam Double-stranded RNA binding motif 2 68 IPR014720 -
Trre11g04276 408 Pfam Double-stranded RNA binding motif 88 153 IPR014720 -
Trre11g04276 408 CDD DSRM_AtDRB-like_rpt2 86 154 IPR044451 GO:0003725
Trre11g04276 408 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1 70 IPR014720 -
Trre11g04276 408 SUPERFAMILY dsRNA-binding domain-like 88 159 - -
Trre11g04276 408 MobiDBLite consensus disorder prediction 243 274 - -
Trre11g04276 408 Gene3D - 84 155 - -
Trre11g04276 408 MobiDBLite consensus disorder prediction 394 408 - -
Trre11g04276 408 MobiDBLite consensus disorder prediction 353 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g04276 Trre-Chr11 55350106 55353821 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g04276 - - cam:101510954 686.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g04276 11 55350106 55353821 Trre11g04276 11 55350106 55353821 ECH
Trre11g04276 11 55350106 55353821 Trre7g01608 7 12265197 12269072 PCT