Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03596 ATGTCGCATAGTTGTGCACCAATCATGGTTGCTCCTATTGTTGACAAGTTTTTGTTTCTGGGAACATCAATTTCTTCATCTTTTCAAAAGTTACTTGTCATGTGGAGAGATCCAGGAGTTTCAGCTGATTCTTTCTATGAAACCAAACCTGATTGCACTGATGTTCCCATTTCAAGATTTAAGATCAAGGCTGGTAAAACACTAAGTCCAAGAAAATGGCATGCTGCATTGAGTCAAGAAGGGTATCTGGATATAGGCAGGACTCTGAGACGAATCTACCGAGGGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTACGACCCCGCGAGTACATTTGATGAAAGAGATCGGATAAGACAACGCCGAAGGAGGCAATATGCTACATGGAAAGAAGAATGTCGCCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTATCACATCACCTGTAATTACCGATGATGGCCAGCCAATTCAAGACCCCATGGTTATGCCAGAAACAAATCCAGGCAATGGATTGGCTGTACTTCCTCAAGATAATAATAGGCTTTCAAGTATAAGTTCCGCAAATATTTTAGAAAATGTGACTGACAAGAAACTAATCCAGTGGTTGTTAACTCTCCATCAAATCGGTCTTGATGTGGTTCGCACTGATAGGACATTGGTTTTTTATGAGAAGCAAGAAAACTTGTCAAAACTATGGGATATTCTTGCGGTTTATGCTTGGATAGATAAAGAAGTTGGGTACGGTCAAGGAATGAGTGATCTATGCTCTCCAATGATAATTCTTCTCGATGATGAAGCAGACGCATTTTGGTGCTTTGAACGACTGATGCGTAGACTTCGAGGAAATTTCAGATGCGTTGGTCGCACTCTTGGGGTGGAGGCTCAACTAAGTAATTTGGCTTCAATTACTCAAGTAGTTGATCCAAAGCTTCATAAACATATAGAACATATTGGTGGAGGCGACTATGTATTTGCTTTTCGGATGCTAATGGTTCTGTTTCGTCGAGAATTTTCCTTTTGTGATTCATTGTACCTATGGGAGATGATGTGGGCTCTAGAATATGATCCTTCCATGTTCTTGATGTATGAAGAAGCTCAATCAGCTTCCGAAAATCCCGAGGGCTTCAGAGGAAAAGCAAAATCAACACGACAATGTGGAAAATTTGAGAGACAAAATATGAGAAATGGAGCAAAGAATGCTGAATCTCCTCTTCCTATATCTGTTTTCCTTGTCGCTAGTGTGTTGAAAGATAAAAGTACAAAACTACTCGATGAAGCGCGAGGCTTGGACGATGTTGTCAAGATATTGAATGACACAACAGGAAATCTAGATGCCAAAAAAGCTTGCACGGAGGCTATGAAGCTTCACAAAAAATATTTAAGAAAGGCCAAGAAAGCCTAA 1428 0.4055 MSHSCAPIMVAPIVDKFLFLGTSISSSFQKLLVMWRDPGVSADSFYETKPDCTDVPISRFKIKAGKTLSPRKWHAALSQEGYLDIGRTLRRIYRGGVHPSIRGEVWEFLLGCYDPASTFDERDRIRQRRRRQYATWKEECRQLFPLVGSGRFITSPVITDDGQPIQDPMVMPETNPGNGLAVLPQDNNRLSSISSANILENVTDKKLIQWLLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKEVGYGQGMSDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCVGRTLGVEAQLSNLASITQVVDPKLHKHIEHIGGGDYVFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPSMFLMYEEAQSASENPEGFRGKAKSTRQCGKFERQNMRNGAKNAESPLPISVFLVASVLKDKSTKLLDEARGLDDVVKILNDTTGNLDAKKACTEAMKLHKKYLRKAKKA 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03596 475 ProSiteProfiles TBC/rab GAP domain profile. 96 362 IPR000195 -
Trre11g03596 475 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 72 322 IPR035969 -
Trre11g03596 475 FunFam TBC1 domain family member 15-like 194 292 - -
Trre11g03596 475 SMART tbc_4 93 381 IPR000195 -
Trre11g03596 475 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 195 292 - -
Trre11g03596 475 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 67 446 - -
Trre11g03596 475 Gene3D - 299 475 - -
Trre11g03596 475 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 300 468 IPR035969 -
Trre11g03596 475 Pfam Rab-GTPase-TBC domain 203 362 IPR000195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03596 Trre-Chr11 49231030 49240054 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03596 - - aprc:113854580 751.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03596 11 49231030 49240054 Trre11g03596 11 49231030 49240054 ECH