Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03582 ATGGAATCGATACTGGGTCGGGCTCTCGAATACACTCTCAAATATTGGCTCAAATCATTCACCAGAGATCAATTCAAATTGCAAGGCCACACTGTTCGTCTTTCTAATTTAGATATCGATGGTGATGCTTTGCATTCTAGTGTTGGATTACCAGCGGCGTTGAATGTTGCATCTGCTAAAGTTGGGAAACTTGAGATAACGCTTCCGTCGGTGAGTAATGTGCAAACGGAACCAATTGTTGTGCAAATTGATAAACTTGATCTTGTTCTTGAGGAGAATTCTGATTTTGATGCATCTTCAAATCCAAACAGTTCTGCGTCTTCAGCTCCGCCTGCCAAGGGTAGCGGTTATGGTTTTGCTGATAAGATTGCAGATGGCATGACTATACAAATTCATACAGTTAATTTATTACTTGAAACTCGCGGAAGTTCTCGTCGCCAAGAGGGAGCAACATGGGCACCACCTATGGCATCTATGACCATACGCAACCTTATGATGTATACCACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCTCGGGAGTTCTCCACGAACAAAAAGTTCATATATGTCTTCAAAAAACTAGAATGGCAATCTTTGTCTATTGATCTTTTGCCGCATCCAGACATGTTCGCAGATGTTGAAGAGGGATCAAACCCGAGGGATGATGATGGCGCAAAAAGAGTTTTCTTTGGAGGAGAGCGTTTTATAGAAGGAATATCAGGAGAAGCATATATCACAATTAAGAGAACTGAATTAAACAGTCCTCTTGGACTTGAGGTTCAATTGCACATCAATGAAGCTGTTTGTCCTGCGTTAAGTGAGCCAGGACTGCGTGCACTTCTTCGCTTCATGACAGGAGTATATGTCTGTCTAAACAGGGGTGATGTTGATTTGAAGGCTCAGCAGCGATCCACTGAAGCAGCTGGGTGTTCTCTTGTATCAATTGTTGTAGATCATATATTTCTTTGCATTAAAGATGCTGAATTCCGGCTGGAATTTTTGATGCAGTCCCTCTTCTTCTCTAGGGCGAGTCTTTCTGAAGTAGATAACGACAAGAACTTGACCAAGATTACAATTGGTGGATTATTTTTGAGGGACACCTTTTCTAGCCCTCCATGTACTTTAGTGCAACCATCAATGCTAGCTGTCACGGGAGATGCTTTTCATGTGCCTGAATTTGCTAGAAGCTTTTGCCTTCCGATATATCCTCTAGGAGAACAACAATGGCAGTTGACCGAGGGTACCCCTCTAATATGCCTCCATGCTCTCCAGATCATACCTTCTCCACTTCCACCATCCTTTGCTTCCCAAACGGTTATTGACTGTCAGCCACTTATGATTCATCTCCAAGAAGAATCATGCTTGAGGATATCCTCTTTTTTAGCTGATGGTATTGTTGTCGGTCCTGGTGACATTTTACCAGATTTCTCAGTGAAATCTTTTATTTTTACTCTCAAGGGATTGGATCTTACAGTTCCTTTTGACAAGGACAAATTGGATATTTCTAGAAGTAACATGGACAGTACAATCCGTACCTCCTTTACTGGAGCAAGGCTTCATATTGAAAGCCTTTTATTTTTAGATTCACCTTCATTGAAACTAAGAATGCTGAACCTTGAGAAGGATCCTGCTTGCTTTTGTCTTTGGGAAGGTCAACCAATTGATGCTACCCAGAAGAAGTGGACAGCCAAAGCATCCCAGCTTACTTTATCTCTGGAAGCATGCACGGGTACAAATGGACACGAGACTGCAGGATTGTGGAGATGTGTTGATCTGACAGAAGCTTGCATTGAAGTAGCCATGGCAACAGTTGATGGCAGCCCGTTGTTAAACATTCCTCCTCCAGGGGGTATTGTCAGGGTTGGAGTTGCTTGCGAACAGTATTTGTCAAACACTTCTGTTGAGCAATTATTTTTCGTCCTAGATCTTTATAGTTATTTTGTAAAAGTTAGTGAAATGATGGCAACAGCTGGAAAAAGGAAACAACTGGAGGACATTGGGAACAAATCTTTCAGTGGAAAGCTTTTGGACAAGGCTCCTAGCGACACTGCTGCGAGTTTTGCAGTGAAAGATCTCCAACTTCGATTCCTAGAGTCTTCATCAATGAATGTGGAGGGACTGCCATTGGTGCAATTTGTTGGAGATGATCTGTTTACAAGTGCTACTCATAGAACCCTCGGTGGGGCTATTGTTGTTTCATCTTCTCTACGTTGGGAGAGTGTTGAGATAAGTTGTGTGGATGCTGAGGGGAAATTGGCATGTGAATCCTTGAGTTCTAGCATAAATGCTCCTTCACCGAGTGATAATGGATATCCGCAACTAAGAGCTGTATTCTGGGTGCATAAGAACGAGAGACATTTAATGGATGGAAATGCTCGCTCTTTCCCTTTTCTGGACATAAGCACAGTTCATGTCATACCATTACATGAACAAGACTTAGAGTCTCATAGTTTAAATGTATCGGCTTTTGTATCTGGTGTTCGTCTTGGTGGGGGAATGAACTATACTGAAGCCGTACTACATAGATTTGGAATACTTGAGCCTGACGGAGCTCCTGGGAAGGGTCTATGTAAAGGTTTGGAAAACTTACAAAAGGGACCATTGTCAAAACTTTTCAATTCAACTCCTCTGATCGTTGATAATTCAGAAAATGTTGAAAACACGGGGGAAGGGAAAGAAACAGGTTTTCCCCACTTGAAGAAGCCAGATGATGTAGATGTAACTATAGAATTGAGAGACTGGTTATTTGCTCTCGAAGGTGCAGAGGATATGGCTGAAAAGTGGTGGTTCTCCAGTCACGAAGATGAAGGAAGAGAAGAGAGGTGTTGGCACACATCTTTCCATAGTTTACAAGTAATTGCAAAAAGTAGCCCGAAGAATGTTTCTGGTGGAAAAGGAAAAATACATAGAATACAGCATCATCCAGTAGAACTGGTTACGGTTGGAGTTCAAGGGCTGCAAATCCTGAAGCCTCGTATCCAAAAAAACATTCCTTCATCAGTGGTAATTGGCAATGGTGTTAAGGAATTTACTGACACAGTTGGAGGAGTTGGTCTTGAAGTTCGGTTGATATTATGTGAGGAGAATGTTGATGATGAAACAACTAATTGGGAAGTGGAAAATCTAAAATTCTCTGTACCACAGCCGGTTGAAGCAGTTGTAACGAAGGATGAGCTTCAGCACCTTACTTTTTTGTGTAAATCTGAAATCGATTCCATTGGACGGATAACTGCTGGAATTATACGGTTGCTAAAGTTAGAAGGCTCTGTTGGTCAGTCTGTAATAGATCAACTAGGCAACCTAGGAAGCGAAGGTATTGACAAGATATTCTCTGGTGAAAAGTTTAGTAGAGATGGTAGTGTTGGTAGTAGAGGACTTTCTCCATTACCAAATCTGATAAGTGAAGAACCAAACAAAACTCCTGAACAGACATTAACTTTGCTTGAGGAAGCAGTTATGGATTCACAGGCTAAAATCAATGATTTAATCAGTGATGTTGGTATTTCAGAGTCTACTTCCTCTCAACACCTTACCATCGTCAAACTGAGTCAAAAGATCGAAAGTATGCAGAGCTTATTGATGCAATTGCGGAATCAACTTTAA 3612 0.4153 MESILGRALEYTLKYWLKSFTRDQFKLQGHTVRLSNLDIDGDALHSSVGLPAALNVASAKVGKLEITLPSVSNVQTEPIVVQIDKLDLVLEENSDFDASSNPNSSASSAPPAKGSGYGFADKIADGMTIQIHTVNLLLETRGSSRRQEGATWAPPMASMTIRNLMMYTTNENWQVVNLKEAREFSTNKKFIYVFKKLEWQSLSIDLLPHPDMFADVEEGSNPRDDDGAKRVFFGGERFIEGISGEAYITIKRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGDVDLKAQQRSTEAAGCSLVSIVVDHIFLCIKDAEFRLEFLMQSLFFSRASLSEVDNDKNLTKITIGGLFLRDTFSSPPCTLVQPSMLAVTGDAFHVPEFARSFCLPIYPLGEQQWQLTEGTPLICLHALQIIPSPLPPSFASQTVIDCQPLMIHLQEESCLRISSFLADGIVVGPGDILPDFSVKSFIFTLKGLDLTVPFDKDKLDISRSNMDSTIRTSFTGARLHIESLLFLDSPSLKLRMLNLEKDPACFCLWEGQPIDATQKKWTAKASQLTLSLEACTGTNGHETAGLWRCVDLTEACIEVAMATVDGSPLLNIPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYSYFVKVSEMMATAGKRKQLEDIGNKSFSGKLLDKAPSDTAASFAVKDLQLRFLESSSMNVEGLPLVQFVGDDLFTSATHRTLGGAIVVSSSLRWESVEISCVDAEGKLACESLSSSINAPSPSDNGYPQLRAVFWVHKNERHLMDGNARSFPFLDISTVHVIPLHEQDLESHSLNVSAFVSGVRLGGGMNYTEAVLHRFGILEPDGAPGKGLCKGLENLQKGPLSKLFNSTPLIVDNSENVENTGEGKETGFPHLKKPDDVDVTIELRDWLFALEGAEDMAEKWWFSSHEDEGREERCWHTSFHSLQVIAKSSPKNVSGGKGKIHRIQHHPVELVTVGVQGLQILKPRIQKNIPSSVVIGNGVKEFTDTVGGVGLEVRLILCEENVDDETTNWEVENLKFSVPQPVEAVVTKDELQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGNLGSEGIDKIFSGEKFSRDGSVGSRGLSPLPNLISEEPNKTPEQTLTLLEEAVMDSQAKINDLISDVGISESTSSQHLTIVKLSQKIESMQSLLMQLRNQL 1203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03582 1203 Pfam N-terminal region of Chorein or VPS13 1 100 IPR026854 -
Trre11g03582 1203 PANTHER UNCHARACTERIZED 1 1201 IPR026728 -
Trre11g03582 1203 Coils Coil 1182 1203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03582 Trre-Chr11 48978913 48988780 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03582 - - gmx:100803142 1946.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03582 11 48978913 48988780 Trre11g03582 11 48978913 48988780 ECH