Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03577 ATGAGGAATGATGGATCAAAACAACAACTTCTTCATCACCAAGGTGGTGTTGGTGTTGGAGTTGGTGCAAGAACCAATGGTTTCATACCTAGCTCGTTTCGCGCTATCTCAAGTTACTTGAGGATTGTTTCCTCGGGTGCTTCCACGGTTGCACGTTCTGCTGCATCGGTTGCTTCATCGATTGTTGATAGGGACGAGGTTGCTGATCATGATCAGGTTATTTGGGCTGGTTTTGATAAGTTGGAGGGTGAAGGCGATACCGTTCAACAAGTACTTCTTCTAGGCTATCGATCTGGCTTCCAGGTTTGGCATGTTGATGAATCAAATAATGTCCGAGACATGGTTTCCAAACACGACGGTCCTGTTTCTTTTATGCAAATGGTTCCAAATCCAATTGCATCGAAAAAATCAGAAGACAAGTTTGCAAGCAGCCGTCCGTTGTTGGTAGTTTGTGCCGCCGATGGACTCTTTGGAGGAGGAAACAATACTAAGGATGGATTGACTGGTCCTCTCAATGGAACTTCAAACTCTCATGATCAAATGAATGGGAACTATATGCCAACTAGTGTTCAGTTTTATTCTATGAAATCACATTCATATGTTCATGTAATGAAGTTTAGATCTGTTGTTTATTCCGTAAGGTGCAGTTCTCGAATAGTTGCTGTTTCTCAATCCACTCAGATACATTGTTTCAATGCTACCACATTAGAAAGGGAATACACTTTACTTACTAATCCAATAGTGATGAGTTGTCCTGGTTCCGGAGGCATAGGATACGGACCGCTTGCAGTGGGTCCAAGATGGCTTGCGTATAGTGGAAGTCCGGTTGCGGTCTCCACTTCCAGCCATGTCAGCCCTCAGCATTTGACACCTTCTGCAAGCTTTCCTGGTTTTTCTTCAAATGGAAGTTTGATTGCGCACTATGCCAAAGAATCAAGCAAGCATCTTGCTACTGGGATTGTTACCCTTGGAGATATGGGATATAAAAAACTTTCTAGATACTGTTCTGAAAACAATGGTTCATTACAATCTGTAAATTCTGGATCAAAGGTCAATGGAAACATTAACGGCCATTCGGCTGATTTAGATAACATTGGAATGGTCATTGTTAAAGATATTGTCACTAAAAACGTTGTTGCCCAATTCCGAGCACACAAAAGTCCGATTTCAGCTTTATGCTTTGATCCTAGTGGCACCCTATTAGTGACCGCTTCTGTTCAGGGTCATAACATAAATGTTTTTAAGATAATGCCTATGCGTGAGAATTCGTCAGCATCTGATGTCGGTCCTTCTCACGTTCATTTATACAGGCTGCAACGTGGTTTTACAAATGCGGTTATACAAGATATAAGTTTTAGTGATGATAGCAAGTGGATTATGATTAGTTCCTCGAGAGGCACTAGTCATCTATTTGCAATAAATCCTCAAGGAGGATATGTAAATATTCAGTCGAATGATGATACAAAAAATAGCGGATTAAGCACTACGACTAATCAAGTAGTTCGCCGGGATCCTATGTCAGCTGTACAAATGCCTAAACAGCAAAGCCTGTATGTAGCCGGCCCTCCAATCACACTTTCTGTAGTAAGCAGAATTAGGAATGGAACTAACGGTTGGAGAGGTACGGTAAGTGGTGCTGCTGCAGCTGCAGCCGGTAGGAAAAGTTCCCTTTCTGGGGCTATTGCTTCGTCTTTCCGTAATTGTAAAGGAAGTGGATTGCTATACGGTGAAGGAAACAATTCCAAGGCAAATTATCACTTGTTGGTCTTTTCACCTAACGGATCGATGATTCAATATGCTCTTAGGACAATAAATGGTCAACATTCAGCTGTTGTTTCTGGATTATCTCCTGCTTATGAATCCAATCCACAGGCCGATGCAAGATTAGTAGTCGAGGCCATGCATAAATGGAATATATGTCATAGTCATAGTCGCAGAGAGCGAGAAGATAATGTTGACATATATGGCGAGAATGGAATTTCTGACAGCAACAAAATATATCCGGAGGAAGTAGAGGAGAACATCATTAATCCTAAAATGAACAATGGTGTAATAAAAGTGAATCCCTCTCTCAAGGAAGAACATCATTTGTATATTTCAGAAGCCGAACTACAAATGCATCAAACTCAGATTCCATTGTGGGCAAAGCCAGAGATATATTTTAATTCAATGTTGAAAGAGTCGACCATAATGGATGAAGAAGGTGCTTCCGGAGGAGAATTTGAGATTGAAAGGATTCCAACTAGCATGATTGAAGCTAGACCAAAAGATTTGGTTCCAATTTTCAACTATATGCAGACTCCAAAATTTCAACAAACAAGGGCTCCTGCTATGGATAGCAAGATAAATGGACAAGTGTTACATCACGGTTCTGAGCCGTATGGAAATGGAAGGATATCACCTAGGAGTATTTCAGCATCTCTTGAGGGCATGAATAATTCTGATGGTGAAGTTACTGAACATAAAAGTCAATTAGAAGATACTGAGTGGGATAATCATGTGATGCCATCAGAAACTATTGGCTTTGTAAATAACAATGACACCCTTAAACCAAATACTCAGCAGCATGAGATTGTAAATACTAGAAGAGAGCACTTAAACACGGGGGCTCAGCTCATGCATGTAAATAGCGACAAAAGGCCTGAAGATGAGCATCATTTTGAAGAAAATGAAGATGAATCTGATTGA 2688 0.4081 MRNDGSKQQLLHHQGGVGVGVGARTNGFIPSSFRAISSYLRIVSSGASTVARSAASVASSIVDRDEVADHDQVIWAGFDKLEGEGDTVQQVLLLGYRSGFQVWHVDESNNVRDMVSKHDGPVSFMQMVPNPIASKKSEDKFASSRPLLVVCAADGLFGGGNNTKDGLTGPLNGTSNSHDQMNGNYMPTSVQFYSMKSHSYVHVMKFRSVVYSVRCSSRIVAVSQSTQIHCFNATTLEREYTLLTNPIVMSCPGSGGIGYGPLAVGPRWLAYSGSPVAVSTSSHVSPQHLTPSASFPGFSSNGSLIAHYAKESSKHLATGIVTLGDMGYKKLSRYCSENNGSLQSVNSGSKVNGNINGHSADLDNIGMVIVKDIVTKNVVAQFRAHKSPISALCFDPSGTLLVTASVQGHNINVFKIMPMRENSSASDVGPSHVHLYRLQRGFTNAVIQDISFSDDSKWIMISSSRGTSHLFAINPQGGYVNIQSNDDTKNSGLSTTTNQVVRRDPMSAVQMPKQQSLYVAGPPITLSVVSRIRNGTNGWRGTVSGAAAAAAGRKSSLSGAIASSFRNCKGSGLLYGEGNNSKANYHLLVFSPNGSMIQYALRTINGQHSAVVSGLSPAYESNPQADARLVVEAMHKWNICHSHSRREREDNVDIYGENGISDSNKIYPEEVEENIINPKMNNGVIKVNPSLKEEHHLYISEAELQMHQTQIPLWAKPEIYFNSMLKESTIMDEEGASGGEFEIERIPTSMIEARPKDLVPIFNYMQTPKFQQTRAPAMDSKINGQVLHHGSEPYGNGRISPRSISASLEGMNNSDGEVTEHKSQLEDTEWDNHVMPSETIGFVNNNDTLKPNTQQHEIVNTRREHLNTGAQLMHVNSDKRPEDEHHFEENEDESD 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03577 895 MobiDBLite consensus disorder prediction 873 895 - -
Trre11g03577 895 Pfam Breast carcinoma amplified sequence 3 521 760 IPR022175 -
Trre11g03577 895 Gene3D - 81 502 IPR015943 GO:0005515
Trre11g03577 895 Pfam WD domain, G-beta repeat 379 408 IPR001680 GO:0005515
Trre11g03577 895 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 9 865 IPR045142 GO:0006914
Trre11g03577 895 SMART WD40_4 197 232 IPR001680 GO:0005515
Trre11g03577 895 SMART WD40_4 375 415 IPR001680 GO:0005515
Trre11g03577 895 SMART WD40_4 431 472 IPR001680 GO:0005515
Trre11g03577 895 FunFam Breast carcinoma-amplified sequence 3 298 521 - -
Trre11g03577 895 SUPERFAMILY WD40 repeat-like 90 474 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03577 Trre-Chr11 48953863 48958479 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03577 - - gmx:100784596 1327
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03577 11 48953863 48958479 Trre11g03577 11 48953863 48958479 ECH