Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03565 ATGGCTCCTCTAACAAACTTGCATGGAGTATCCAAAACTTTAACTCCAATAACATGTCTTCTTCCAAATGCACAAAGAACCTTTAGGAAAGGACAAGTAGTTGTTGGATTTCTTGGAAGCAAAACAAAGAAATTATCAGAATGTGAATCAGTTGTTAACACTACAAGAAGAACAGCTGCAATAAGTCTTGTTTCTTTAGTACTTACATGGCAATTCAATGAGAAGATTTCACTTGCTAAGGATAATGGATTTTGGATTGATGGACCTATTCAAGAACCAATTGTCACTAATAATATTGCGAATGAGAAAACGGGGACACGTTCTTTTATTAAGAAAAGACTCTACATGGCAAATATTGGAACAAAAGGAAGTGTTTTTAGGATCAAGAAATCTTCATTTGATCTTCTTGCAATGGCTGATTTAATTGCACAAGACACACTCAACTATGTTAGGAGGTACCTAAGACTCAAGTCAACTTTCATCTACTTTGATTTTGACAAAGTTATCTCTGCTGCTCCAGATGAAGATAAGCAGGAATTAACTAATGTGGCTAACAAATTGTTTGATAATTTTGAAAGGCTTGAAGAAGCTTCAAGGAACAAAAATCTAGCTGAAACACAAGCATGCTATAAGGAAACTGAAGTTATGCTTAAAGATGTCATGGATAGGATGACTATAATGTATAAAACAATTTGA 696 0.342 MAPLTNLHGVSKTLTPITCLLPNAQRTFRKGQVVVGFLGSKTKKLSECESVVNTTRRTAAISLVSLVLTWQFNEKISLAKDNGFWIDGPIQEPIVTNNIANEKTGTRSFIKKRLYMANIGTKGSVFRIKKSSFDLLAMADLIAQDTLNYVRRYLRLKSTFIYFDFDKVISAAPDEDKQELTNVANKLFDNFERLEEASRNKNLAETQACYKETEVMLKDVMDRMTIMYKTI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03565 231 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 50 224 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Trre11g03565 231 SUPERFAMILY Oxygen-evolving enhancer protein 3, 115 224 IPR023222 -
Trre11g03565 231 Coils Coil 177 197 - -
Trre11g03565 231 Gene3D - 88 225 IPR023222 -
Trre11g03565 231 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 46 224 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Trre11g03565 231 FunFam Photosynthetic NDH subunit of lumenal location 3, chloroplastic 87 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03565 Trre-Chr11 48872000 48873745 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03565 K08901 - gmx:100814163 332.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03565 11 48872000 48873745 Trre11g03565 11 48872000 48873745 ECH