Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03560 ATGTTAAACTCCACCGTATTTAAGGTTTTGGAGTTGGCTGGAAATGAAGCAAGGGACAACATGAAAACTAGAATTGTGCCAAGACACATTCAATTAGATGTAAGGAATGATGAAGAATTGAGCAAGCTTCGTGGTGATGTTACAATTGCTAACGGTGGTGTTATGCCTAATATTCATAACTTGGTTCTTCCAAAGAAGACTGGTGCTTCTTCATAG 216 0.3843 MLNSTVFKVLELAGNEARDNMKTRIVPRHIQLDVRNDEELSKLRGDVTIANGGVMPNIHNLVLPKKTGASS 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03560 71 PRINTS Histone H2A signature 18 32 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre11g03560 71 PRINTS Histone H2A signature 46 64 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre11g03560 71 PRINTS Histone H2A signature 4 17 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre11g03560 71 Pfam C-terminus of histone H2A 38 71 IPR032454 -
Trre11g03560 71 SUPERFAMILY Histone-fold 2 68 IPR009072 GO:0046982
Trre11g03560 71 SMART h2a4 1 69 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre11g03560 71 PANTHER HISTONE H2A 6 67 IPR002119 GO:0000786|GO:0003677|GO:0030527
Trre11g03560 71 Gene3D Histone, subunit A 1 71 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03560 Trre-Chr11 48799787 48800696 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03560 K11251 - csav:115725459 115.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03560 11 48799787 48800696 Trre11g03560 11 48799787 48800696 ECH