Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03556 ATGGTAGCTATGGCTATGGTTGCTCTTCAGAGTTCCATGACCTCACTCTCCATCTCCTCTAAATCTTTCTTCGGTCAGCCTATCACATTCCCTTCTCTTCTTCCGGGTAAGCCAACAGAGAAGAAATGTCTTACTGTAATGAAGTATAAACGATGGGAAAGAGTTGAATGTAAACCAAACAGCCTTCCCAAGTTACACAAAATGCATGTTAAAATTGGAGATACAGTGAAAGTCATATCTGGACGTGACAAGGGTCAAATTGGAGAGATTACTAAGATCTTCAAGCACAACAGCACTGTTATTGTCCAGGACATAAACTTGAAAACAAAGCATCAGAAGAGTAGAGACGAGGGAGAACTAGGGCAAATAAGTCAGATTGAAGCTCCTATCCACAGTTCAAATGTGATGCTCTACTCGAAAGAAAATAATATAGCGAGCCGTGTAGGTCATAAAGTCGTTGAGAATGGTAAAAAAGTTCGTTACCTACTGAAAACTGGAGAGATAATTGATAGTGATGAGAATTGGAAGAAACTGAAGGAAGCTTCTAAGACGACTGAAGTTGCTACTACTGCTTAG 576 0.401 MVAMAMVALQSSMTSLSISSKSFFGQPITFPSLLPGKPTEKKCLTVMKYKRWERVECKPNSLPKLHKMHVKIGDTVKVISGRDKGQIGEITKIFKHNSTVIVQDINLKTKHQKSRDEGELGQISQIEAPIHSSNVMLYSKENNIASRVGHKVVENGKKVRYLLKTGEIIDSDENWKKLKEASKTTEVATTA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03556 191 SMART kow_9 69 96 IPR005824 -
Trre11g03556 191 SUPERFAMILY Translation proteins SH3-like domain 64 168 IPR008991 -
Trre11g03556 191 ProSitePatterns Ribosomal protein L24 signature. 73 90 IPR005825 GO:0003735|GO:0005840|GO:0006412
Trre11g03556 191 Gene3D - 61 168 IPR014722 -
Trre11g03556 191 Hamap 50S ribosomal protein L24 [rplX]. 68 164 IPR003256 GO:0003735|GO:0005840|GO:0006412
Trre11g03556 191 NCBIfam 50S ribosomal protein L24 67 169 IPR003256 GO:0003735|GO:0005840|GO:0006412
Trre11g03556 191 CDD KOW_RPL26 73 137 IPR041988 GO:0003723
Trre11g03556 191 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 4 184 IPR003256 GO:0003735|GO:0005840|GO:0006412
Trre11g03556 191 Pfam KOW motif 73 102 IPR005824 -
Trre11g03556 191 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 105 169 IPR003256 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03556 Trre-Chr11 48712410 48715454 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03556 K02895 - gmx:100306643 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03556 11 48712410 48715454 Trre11g03556 11 48712410 48715454 ECH