Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03545 ATGCCTACTTCTCTTGATCATGATCTCTCCCAAAAAAACAAAAAAATTATTGACTTCATTGAGGATGCTACTTCACATGCAGATGAAATCCAAAAAAATGTCTTAGCTGAAATTCTCTCACACAATGCAAATGTTGAATATTTGCAAAGACATGGTCTCAATGGTCACACAGATAGTGAAACTTTCAAGAAACTTCTTCCTATAATATCATATGAAGATATCAAACATGATATTAACCGTATTGCCAATGGTGACACTTCTCCAATCCTCACCTCAAATCCCATTTCAAACTTTCTCACTAGCTCAGGCACATCTGGTGGTGAGAGAAAGTTGATGCCAGCAACTGAAGAAGAACTTGGAAGAAGATATTTTCTCTATAGTCTATTAATGCCAATATTGAGTCAATTTGTTCCTGACCTAGAAAAAGGCAAAGGAATGTACCTAATGTTCATAAAAAATGAATCTAAAACACCAGGAGGTATTAAGGCTAGTCCAGTTCTCACAAACTATTACAAAAGTTCGCATTTTTTAAACCGATCTTATGATCCATACACAAATTACACAAGCCCAAATGAAACCGTTCTTTGTCTTGACTCATACCAAAGTATGTACTCACAACTTCTATGTGGTCTTTGTCAAAACAATGAGGTCCTTCGTGTCGGCGCTGTTTTTGCTTCTGGTCTAATTCGCGCCATTCATTTTCTCGAAAAACATTGGTTGCTTTTTTGTAATGATATAAGAACAGGAACTCTTAACCCGCTTATCACCGACATTTCGGTAAGAGACGCGGTGATGAAGATCCTAAAACCGGACGAAAATCTTGCTAACTTTATTGAATTTGAGTGTAGTAAAAATTCTTGGCAAGGTATTATTACTAGGTTGTGGCCTAATACTAAGTATATTGATGTTATTGTGACTGGTACCATGTCACAATACATTCCAACTTTGGAGTATTATAGTAATGGGTTACCACTTGTTTGTACTATGTATGCTTCAAGTGAATGTTTCTTTGGTGTTAACCTTAATCCCCTTTGTAAACCTTGTCAAGTGTCTTATACACTTATCCCCACCATGTGCTACTATGAATTTTTACCTGTTAATAGAAGTAATGATCCTCCCAATGAGAAAGAAAAGCAAGAATTGGTTGACCTTGTTGATGTCAAGCTTGATCAAGAGTATGAGCTAGTTGTTACAACTTATGCTGGACTTTATAGGTACAAAGTTGGTGATGTATTGAAAGTGACTGGATTCAAGAACAAGGCACCACAATTCAGCTTTGTATGCAGAAAAAATGTTGTCCTAAGCATAGAATCAGACAAAACAGATGAAGTTGAGTTACAAAATGCAATGAAAAATGCAATGACACATTTAGCACCATTTGATGCAGATGTAGCAGAGTACACAAGTTATGCAGACACAACAACAATTCCAGGACACTATGTGCTTTATTGGGAATTAAATCTCAAAGGGTCAAAAATAATTCCTCCTTGTGTTTATGAAGATTGTTGTTTAACAATTGAGGAATCATTTAACAGTGTTTATCGACAAAGTCGAGTTTCGGATAAATCAATTGGTCCACTTGAGATTAAGATTGTTGAGCAGGGTACATTTGATAAACTTATGGATTATGCAATTAGTTTGGGAGCTTCAATTAATCAATACAAGACTCCTAGGTGTGTGAAAGTTGGACCTTTTGTGGAGCTTTTGGAGTCAAGAGTTGTTGAAAATTATTTTAGTCCTAAATGTCCAAAATGGGTTCCTGGTCATAAGGATTGGAATAATGGGAATTGA 1791 0.359 MPTSLDHDLSQKNKKIIDFIEDATSHADEIQKNVLAEILSHNANVEYLQRHGLNGHTDSETFKKLLPIISYEDIKHDINRIANGDTSPILTSNPISNFLTSSGTSGGERKLMPATEEELGRRYFLYSLLMPILSQFVPDLEKGKGMYLMFIKNESKTPGGIKASPVLTNYYKSSHFLNRSYDPYTNYTSPNETVLCLDSYQSMYSQLLCGLCQNNEVLRVGAVFASGLIRAIHFLEKHWLLFCNDIRTGTLNPLITDISVRDAVMKILKPDENLANFIEFECSKNSWQGIITRLWPNTKYIDVIVTGTMSQYIPTLEYYSNGLPLVCTMYASSECFFGVNLNPLCKPCQVSYTLIPTMCYYEFLPVNRSNDPPNEKEKQELVDLVDVKLDQEYELVVTTYAGLYRYKVGDVLKVTGFKNKAPQFSFVCRKNVVLSIESDKTDEVELQNAMKNAMTHLAPFDADVAEYTSYADTTTIPGHYVLYWELNLKGSKIIPPCVYEDCCLTIEESFNSVYRQSRVSDKSIGPLEIKIVEQGTFDKLMDYAISLGASINQYKTPRCVKVGPFVELLESRVVENYFSPKCPKWVPGHKDWNNGN 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03545 596 Pfam GH3 auxin-responsive promoter 20 561 IPR004993 -
Trre11g03545 596 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 12 582 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03545 Trre-Chr11 48452058 48454990 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03545 4 579 EF-hand Containing Proteins AT1G23160 50.940 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03545 K14487 - gmx:100791987 1008.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03545 11 48452058 48454990 Trre11g03545 11 48452058 48454990 ECH