Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03532 ATGGCTTCACAAAACACTCAACAAGTTCAATTTCAAGACTCATTACCCATCATGGCAAACAAGCTTGGTGGGGATGGATTAATAGATGAACTATGCAATGGTTTCAATCTTTTGATGGATTCTAACACAAGGGTTATTACCTTTGAAAGTCTTAAGAAGAATTCAGCTTTGTTTGGTTTACAAGATTTAAGTGATGAAGATCTTCAATCAATGATTGTTGAAGGTGATTTTGATGGTGATGGTGCTCTTAATCAATTGGAGTTTTGTGTTTTGATGTTTAGACTTAGTCCTGAACTTATGGATGGGTCTAAGTTATGGTTGGAAGAAATGCTTCAACAAGAAATGAAAGATTTTTTCTAA 360 0.3417 MASQNTQQVQFQDSLPIMANKLGGDGLIDELCNGFNLLMDSNTRVITFESLKKNSALFGLQDLSDEDLQSMIVEGDFDGDGALNQLEFCVLMFRLSPELMDGSKLWLEEMLQQEMKDFF 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03532 119 Pfam EF-hand domain pair 43 94 IPR002048 GO:0005509
Trre11g03532 119 SUPERFAMILY EF-hand 4 92 IPR011992 -
Trre11g03532 119 Gene3D - 8 118 - -
Trre11g03532 119 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Trre11g03532 119 PANTHER CALCIUM-BINDING PROTEIN KIC 8 117 IPR044205 GO:0005509
Trre11g03532 119 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03532 Trre-Chr11 48220076 48220435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03532 2 114 EF-hand Containing Proteins AT5G54490 60.526 4.81e-46 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03532 K24345 - gmx:100500465 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03532 11 48220076 48220435 Trre11g03532 11 48220076 48220435 ECH