Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03378 ATGGCTATTCGTCACATAAGATTCTTCCCTCACACACTTGTTACTTCTACAAACTTCACTCCCAAACTCAAAATCAACCATAACCGTTTTTTCTTCTCTCCTTCACACTCTTCTTCTTCTTCTTCTTCTTCCACCGTCACTGCCATGGCTTCAAATGCTCGTAAAGTCTTGATTCCGATCGCTGATGGCACAGAGCCTATGGAAGCTGTCATCACCATCGACGTTATCCGTCGATCCGGAGCTGACGTCACCGTCGCATCCGCCGCTAATAATCTACCCGTTAAAGCTCTCCACGGCGTTAAAATCATTGCCGATGCTTCGGTTTCTGATGTTGCCAATACCGCTTTCGACGTTATCGCTCTCCCTGGTGGGGTTCCAGGTGTGGACAATCTTAGAGACTCTGCAGTGTTGGAAGGGTTGGTAAAGAAGCATGTTGAGGATGGAAAGCTTTATGCTGCTGTCTGTGCTGCTCCTGCAGTGGTACTTGGGCCATGGGGTTTGCTGAATGGTTTGAAGGCAACTTGTCATCCTTCATTCATGGAAAAATTGGCCTCTTACACTACTTCTGTTGAGTCAAGGGTGCAGCTCGATGGCAGAGTTGTGACCAGTCGTGCACCTGGTACCACCATGGAGTTTGCTGTTGCTATAGTTGAGCAATTATATGGAAAGGAGAAAGCTGACGAAGTTGCAGGTCCACTGGTTATGCGCTCTAATCATGGCGATGAACATACTTTTTTAGAGCTAAACCCAGTGCAATGGACATTTGACAATCCACCCAAGATTCTTGTACCAATTGCTAATGGCACAGAAGAAATGGAAGCTGTGATTATCATTGATATTCTGCGACGAGCAAAGGCAAATGTTGTGGTTGCTTCTGTTGAGGACAAACTAGAGATCGAGGCATCGCGTAAAGTTAAACTGGAAGCAGACATACTCCTTGATGAAGCAGCTAAACTTTCATATGACCTAATTGTGTTACCTGGTGGACTTGGTGGTGCCCAAGCTTTTGCAAACTCCGAAACCTTGGTGAATTTGTTGAAAAAGCAAAGAGAATCAAACAGATATTATGGAGCAATTTGTGCATCCCCAGCTTTAGTTTTGGAGCCCCATGGCTTGCTAAAGGGTAAAAAGGCTACTGCTTTTCCTGCCATGTGCAGCAAGTTATCAGATCAGAGTGAAGTAGAGAATAGGGTTGTCGTTGATGGTAACCTTATTACCAGCAGAGGCCCCGGAACCTCCATCGAGTTTGCATTAGTTATTGTGGAGAAGCTGTTTGGACGCAATTTAGCTCTTGAACTTGCAAAGACAACAGTGTTCACAAGCCCATGA 1329 0.4545 MAIRHIRFFPHTLVTSTNFTPKLKINHNRFFFSPSHSSSSSSSSTVTAMASNARKVLIPIADGTEPMEAVITIDVIRRSGADVTVASAANNLPVKALHGVKIIADASVSDVANTAFDVIALPGGVPGVDNLRDSAVLEGLVKKHVEDGKLYAAVCAAPAVVLGPWGLLNGLKATCHPSFMEKLASYTTSVESRVQLDGRVVTSRAPGTTMEFAVAIVEQLYGKEKADEVAGPLVMRSNHGDEHTFLELNPVQWTFDNPPKILVPIANGTEEMEAVIIIDILRRAKANVVVASVEDKLEIEASRKVKLEADILLDEAAKLSYDLIVLPGGLGGAQAFANSETLVNLLKKQRESNRYYGAICASPALVLEPHGLLKGKKATAFPAMCSKLSDQSEVENRVVVDGNLITSRGPGTSIEFALVIVEKLFGRNLALELAKTTVFTSP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03378 442 SUPERFAMILY Class I glutamine amidotransferase-like 54 237 IPR029062 -
Trre11g03378 442 Gene3D - 255 441 IPR029062 -
Trre11g03378 442 Gene3D - 47 247 IPR029062 -
Trre11g03378 442 FunFam Protein DJ-1 homolog C 48 238 - -
Trre11g03378 442 NCBIfam DJ-1 family protein 260 435 IPR006287 -
Trre11g03378 442 NCBIfam DJ-1 family protein 55 231 IPR006287 -
Trre11g03378 442 FunFam Protein DJ-1 homolog C 253 442 - -
Trre11g03378 442 Pfam DJ-1/PfpI family 260 422 IPR002818 -
Trre11g03378 442 Pfam DJ-1/PfpI family 54 219 IPR002818 -
Trre11g03378 442 SUPERFAMILY Class I glutamine amidotransferase-like 258 439 IPR029062 -
Trre11g03378 442 CDD GATase1_DJ-1 56 220 - -
Trre11g03378 442 CDD GATase1_DJ-1 261 424 - -
Trre11g03378 442 PANTHER PROTEIN/NUCLEIC ACID DEGLYCASE DJ-1-RELATED 54 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03378 Trre-Chr11 45859955 45864074 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03378 K03152 - gmx:100803116 676.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03378 11 45859955 45864074 Trre11g03378 11 45859955 45864074 ECH