Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03361 ATGTCTCTCTCTTTCACTTCCCCTCCCCGTTCCCGCCGGCGCCACCGCCACAACCACCGTACACCGTTCCTCTTCCTCTTCCTCGGCATAATCACAATCCTCTTCACTCAATCTCACGCTCGCTTATTTACTCGCGATCTAATTTCCGATGGTTCCAACTTTCTCCGTCTTCCAACAGATTTACCTCTTCATGGAGAAGAATCCACCTGTGAACAAACCTACGGTTTCTTACCCTGCACAACCACCGTTTTCGGTAACTTGTTCCTCATTATTGTCTATGGATTCCTCATGTACACTGCTGCTACTTTCTTATCTAACGGTAGTGAACTCTTGCTTGAGATCTTGGGTCCTGGCATTGTTGGTGGCTTGTTTCTTCCTATTCTCGGTGCTCTCCCTGATGCCATGCTCATTCTCGTATCTGGGCTTTCAGGAAGCCCGGAAGTTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGATCAACAGTGCTGCTTCTCACTATAATATGGGGGACTTGTGTAATTGTAGGCAAGTGTGACATTGAGGATTCAATTGCATTAGATTCAACGGACACTAGGGGGTTCAGTTTAACTGGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCAAGGATTATGATTATATCTGTCATTCCATTTTTGATTGTTCAATTACCACAGATTCTCCATTCAAATTCTGGAAGGCACTTGGCTGTTTTGATTGGTTTTGTTGTCTCTGTCTGTTTATTGATCTCTTATTGCCTTTACCAGATTTTCCAGCCCTGGATACAAAAGAGAAAATTGGAATATATTAAACACAAGCATGTTATTGTGGGACTTTTGAGACATTTGAAGATGCGTTCATTGGGAAGGCTGCTAAATGATGATGGTGAACCGAATAAAGAAGTAATTAAAAAGTTGTTTGCAACCATTGATGAAAATAAAGATGGTCATCTTACTCATGGTGAAATGACAGCACTAGTTGTTGGAATTCAATTTGAGGAGATAGACCTGGAGCATGATGACGCTGTGAGAAGAATAATGACAGACTTTGATACTTCTCGTAATGAACTTATTGATGAAGAAGAATTTGTTAATGGAGTCTGTAGATGGCTTCATGCAGCGAGGCGTACTCGTGCTCCAGCTGGTGATGCTGGTCCACACACTGTGAAGTTTTTAAGCAATTTTCACACAGAAACAAAGAGGGAACACGATCTTCTGGATGTCGGGGGTCAGAGTGATGATGTCTCCGAGGGTGTAGAAAATGCTAAATGGATTTCCATCAAAGCAGGATTATTCCTGTTACTGGGTTCTCTTATTGCTGCTGCATTTGCTGATCCTTTGGTTGATGTAGTTGATAACTTTTCTGATGCTACAAGTATTCCAGCTTTCTTCATTTCCTTTATTTTTCTACCTCTTGCAACCAATTCAAGCGAAGCAGTATCAGCAATTATTTTTGCTAGTCGTGATAAGAGGCAAACAGCATCATTAACATTTTCTGAGATATATGGTGCAGTAACGATGAACAATGTGCTCTGTCTATCGGTCTTCTTGGCGCTCGTATATGTGAGGGGATTGACATGGGACTTTTCTTCAGAAGTGTTGGTTATTCTCATCGTTTGCATTGTCATGGGCGCCTTCGCCAGTTTCCGCACAGTTTTCCCTCTATGGACATCAATACTTGCTATCCTGCTTTATCCTTTCTCCCTGGCATTGGTCTATGTTCTTGATTATCAATTTGGGTGGTCATAG 1764 0.4223 MSLSFTSPPRSRRRHRHNHRTPFLFLFLGIITILFTQSHARLFTRDLISDGSNFLRLPTDLPLHGEESTCEQTYGFLPCTTTVFGNLFLIIVYGFLMYTAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSPEVAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIALDSTDTRGFSLTGSGVSTDIWTSYAARIMIISVIPFLIVQLPQILHSNSGRHLAVLIGFVVSVCLLISYCLYQIFQPWIQKRKLEYIKHKHVIVGLLRHLKMRSLGRLLNDDGEPNKEVIKKLFATIDENKDGHLTHGEMTALVVGIQFEEIDLEHDDAVRRIMTDFDTSRNELIDEEEFVNGVCRWLHAARRTRAPAGDAGPHTVKFLSNFHTETKREHDLLDVGGQSDDVSEGVENAKWISIKAGLFLLLGSLIAAAFADPLVDVVDNFSDATSIPAFFISFIFLPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILIVCIVMGAFASFRTVFPLWTSILAILLYPFSLALVYVLDYQFGWS 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03361 587 Gene3D - 256 384 - -
Trre11g03361 587 FunFam Sodium/calcium exchanger NCL2 423 580 - -
Trre11g03361 587 Pfam EF-hand domain pair 305 370 IPR002048 GO:0005509
Trre11g03361 587 ProSitePatterns EF-hand calcium-binding domain. 316 328 IPR018247 -
Trre11g03361 587 ProSiteProfiles EF-hand calcium-binding domain profile. 303 338 IPR002048 GO:0005509
Trre11g03361 587 Gene3D - 423 581 IPR044880 -
Trre11g03361 587 SUPERFAMILY EF-hand 302 377 IPR011992 -
Trre11g03361 587 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 74 579 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre11g03361 587 SMART efh_1 307 335 IPR002048 GO:0005509
Trre11g03361 587 SMART efh_1 347 375 IPR002048 GO:0005509
Trre11g03361 587 Pfam Sodium/calcium exchanger protein 88 264 IPR004837 GO:0016020|GO:0055085
Trre11g03361 587 Pfam Sodium/calcium exchanger protein 436 578 IPR004837 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03361 Trre-Chr11 45628772 45636334 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03361 46 587 EF-hand Containing Proteins AT1G53210 67.273 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03361 - - gmx:100809896 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03361 11 45628772 45636334 Trre11g03361 11 45628772 45636334 ECH