Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03358 ATGAGAAACATTAATACAAAATCATTATGCTTCACAATTCTCTTTATTTCAATAGTATCATCATCAATTCATGTTCAATGTCGTTCTCTTCCAAATGAATTGATTTCAAATGGAGTTGATGATGATGTTCAATCATCACAACAAGATTCTAATTATTATCTACTTCTTAATAGGAGTAATAATAATAATAATGATAAAGATATTGTTGAATTTGAATCTTCAAATTCAGGAGAGTATTGTAAGCAAATGTATGGATTTTTACCATGTTCTAATAACATTTTTGGGCATCTCTTTTTGATTTTGGTTTATGAGTACTTATTGTTCCATGGAGAATCATATTTGGCTGCTGGAGGTGAACAAATTTTCAAGATTCTTGGTCCAGGTGTTTTTGGTGCTAGTGCTTTTGATATTCTTGGTGCTCTTCCTGAATCCTTAATTCTTCTTGTAACTGGACTTTCAAGTGACAAGGAGAGTGCACAAGAATATGCTTCCACTGGTGTTGGTTTGTTAGCTGGATCATCCATCTTACTTCTTACAGTAGTATGGGGGACTTGTGTTATTGTTGGCAAACAAAATTTGAAAAATGACTCGAATTCTGTTACCTCATATTCATCTGCAGAAAGAATTAAACAATCTTTGATTGGTTATGGCATTACTATGGATGTAGACACTAGAAAGATGGCAAGAATCATGGTTTTCTCTATTATTCCACTCCTCATAATGCAGATGCCTACATTATTCCATTTCTCTACAACATTACGGAATGTTACCTTGATGATTTCTCTCATCATTGCTGTCACTTTTCTCATCTCATACTTCATTTACCAGATATTTAAGCCTCAGATAGAGAAAACAAGATTAGAATACATAAAGCATGATGATTTAATATTAAGAATTTTCCAACGTGTCGAAAAGCAAACTCTCCAAAAAATCCTAGCTGAGGATGGAACTCCAAATGTAACTGCCATAAGTGGGCTATACAGTGAATTCAGCCAACGCGGGGAAAATCATTTATCAGCTTCTGAAGTAAGAGAGCTTTTGCTAGGGAACAATTTAACCGGCACAAATATCAGAGAGGATCAAATAACTGACATGTTAAAAGTTTTTGACAAAAATGGTGATCAAATTATAACCAAAGAAGAATTTGTTAGTGGCTTAACAGAATACATTAACCAAACAAAGCATGCTTTGGATAGACAGTACCTCCCCAAACAATCTATGAACAAAATGTATCAGGCTTTTATAAAGCCTTGGATTGAAAACATGAGAAAAGAACGCGCATTGAAGGGACATCTTATTTCGGGAGTTTTAGATCATGCTCAAAATGATATGGTTGGTAGGTTGCTCAAAGATGACGGTACACCTGATAAAGATGCTATCAAAAGGTTGTTTGAGGAAGTCGATAGTGATGGTAGTAACAATGTTTCGAGGTCCGAACTAGAAAAAATAGTGAAAGAGATTCATTTTGGCAAGGGTGTAGATTCAGATGAAGCAACCACAAAACTACTTCATGATCTTGATGTCAACAAAGACGATGAAATTAGCGAAAATGAATTTGTTGATGGCTTCACCAAATGGTTAAACTCAAATTCTAATCAAGCTGCTAGCTCAAAATCATCTTCTCATGAACCTCATCAAACATGGGAAGAAGTTGAGAAGGTAATGGAAGGGAATCAAACCAAAGGAGTGTATGCATGGTTAGAAGCTATAGCATATGTGATGTTGGGAATTATTATGCTGTCACTTCTTGCTGAGCCTCTAATAGCAAGTGTTCAGAATTTTTCTGAAGCTGCAGGAATTTCATCATTTTTCATCTCTTTCATTTTAGTCCCTTTAGCTACAAATTTTAGAGAAGCTACCTCAGCTATCAAAGAAGCTAGCCATAAGAAAAGTAGTAATACATCTCACACAATGTACGAGATTTATGGAGCAGTTTTTATGAACAACATTCTTGGATTTGTGGTGATATCTAGTCTTATATATATGAGAGATATCACATGGGAATTTTCAGCTGATGTATTGGTGGTGGCAATTGTTTGTATTGTGATGGGCCTAACTGCTAGTTTTCGTTCTACATTTCCTCTATGGACATCCTTCCCTACATATATCTTGTACCTAATATCATTGGTTTTGGTTTATGTTCTCAAAGATGTTCTCAATTATGTTTAG 2169 0.3481 MRNINTKSLCFTILFISIVSSSIHVQCRSLPNELISNGVDDDVQSSQQDSNYYLLLNRSNNNNNDKDIVEFESSNSGEYCKQMYGFLPCSNNIFGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDILGALPESLILLVTGLSSDKESAQEYASTGVGLLAGSSILLLTVVWGTCVIVGKQNLKNDSNSVTSYSSAERIKQSLIGYGITMDVDTRKMARIMVFSIIPLLIMQMPTLFHFSTTLRNVTLMISLIIAVTFLISYFIYQIFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILAEDGTPNVTAISGLYSEFSQRGENHLSASEVRELLLGNNLTGTNIREDQITDMLKVFDKNGDQIITKEEFVSGLTEYINQTKHALDRQYLPKQSMNKMYQAFIKPWIENMRKERALKGHLISGVLDHAQNDMVGRLLKDDGTPDKDAIKRLFEEVDSDGSNNVSRSELEKIVKEIHFGKGVDSDEATTKLLHDLDVNKDDEISENEFVDGFTKWLNSNSNQAASSKSSSHEPHQTWEEVEKVMEGNQTKGVYAWLEAIAYVMLGIIMLSLLAEPLIASVQNFSEAAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSHTMYEIYGAVFMNNILGFVVISSLIYMRDITWEFSADVLVVAIVCIVMGLTASFRSTFPLWTSFPTYILYLISLVLVYVLKDVLNYV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03358 722 Pfam EF-hand domain pair 458 521 IPR002048 GO:0005509
Trre11g03358 722 SMART efh_1 498 526 IPR002048 GO:0005509
Trre11g03358 722 SMART efh_1 361 389 IPR002048 GO:0005509
Trre11g03358 722 SMART efh_1 459 487 IPR002048 GO:0005509
Trre11g03358 722 ProSiteProfiles EF-hand calcium-binding domain profile. 494 529 IPR002048 GO:0005509
Trre11g03358 722 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 81 714 IPR004713 GO:0006812|GO:0008324|GO:0016020
Trre11g03358 722 ProSiteProfiles EF-hand calcium-binding domain profile. 455 490 IPR002048 GO:0005509
Trre11g03358 722 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Trre11g03358 722 ProSitePatterns EF-hand calcium-binding domain. 468 480 IPR018247 -
Trre11g03358 722 Gene3D - 396 538 - -
Trre11g03358 722 CDD EFh 460 524 IPR002048 GO:0005509
Trre11g03358 722 ProSitePatterns EF-hand calcium-binding domain. 370 382 IPR018247 -
Trre11g03358 722 Gene3D - 317 395 - -
Trre11g03358 722 ProSiteProfiles EF-hand calcium-binding domain profile. 357 392 IPR002048 GO:0005509
Trre11g03358 722 Pfam Sodium/calcium exchanger protein 570 713 IPR004837 GO:0016020|GO:0055085
Trre11g03358 722 SUPERFAMILY EF-hand 327 527 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03358 Trre-Chr11 45578702 45583789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g03358 410 715 EF-hand Containing Proteins AT1G53210 39.692 1.71e-63 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03358 - - gmx:100799062 1056.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03358 11 45578702 45583789 Trre11g03358 11 45578702 45583789 ECH