Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03216 ATGGGAAAAAATCACTTTGAGGAATTACCTTCACATTTGATTTTGGAAATTCTGTGCTCAGGGAAGCTCAGTGCAATAGACCTTGTTTGTTTGGAATTTGCTTCAAAAACTTTTGGTGCTAGAAATGACTTATGTGACTTAAAGTTTAAGTCATTAGTAGACTTTGCTGCATTTCAATTGTGTGGCTCTCATGCCACCTTTTCCATGATTGGTTTGAATTCTCAAAAGGATTTGTATGATCGATGTGGCGGAAAATGGAAGCGGGTTTTGAGGTTCTTGGAGTCTGTTGAACAATCCTCTAACATGGTTGAGACATCTTCAGGCAATATGCAAATTACGGCAGGAAAGTATCACACCTTGGCGATCAGCAACTCCTCGGTCTATTCTTGTGGTTCTAGTTTGTGTGGCGTACTTGGTCAAGGATCTGAAACAACACAGTGTTCAACATTTACCCGAATCAACTTCCCACCTTTGGCGCGTGTGGCACATGTTTCGGCCTCCTATAACCATGCAGCCTTCGTTATGCAATCTGGAGAGGTATTCACATGTGGAGATAATTCATCTTCGTGCTGTGGTCATAGCGATACAAATCGACCAATTTTCAGGCCACGTCTTGTTGAATCCTTAAAGGGGATTCCTTGCAAGCAGGTTGCAGCAGGGCTAAACTTCACAGTCTTCCTCACTAGACAAGGTCATGTGTATACATGCGGAACCAACTCGCATGGCCAACTTGGCCACGGCGACGCCCAAGACAGACCAAGCCCCAAAAAGATTGAATTCCTTGGTAAAGTAGGACCTATTGTTCAAGTTGCTGCTGGACCTAGCTATATCTTATCTGTAACAGAAGATGGATCAGTATACTCATTCGGATCAGGTGGTAATTTCTGTCTTGGCCATGGTGAGCAACATGACGAGTTGCTGCCACGCTTGATACATAAATTTAGAAGAAACGGTATTCATATTGTTCAAGTATCTGCTGGGGACGAGCATGCCGTGGCGCTTGATTCAAATGGATTTGTATATACATGGGGGAAGGGATATTGTGGCGCTTTAGGCCATGGAGATGAGATTGAGAAAACAAGACCAGAGTTGTTGTCGAGTCTCAAGAATCACTTGGCTGTTCAGGTCTGTGCAAGAAAGCGAAAAACCTTTGTTCTACTTGATTCAGGTTTGGTCTATGGCTTTGGCTCAATGGGATTTGGCAGCCTAGGATTTCTAGACAGAAAATTAACTGATAAAATCTTGAAACCAAGAATCTTAAACTCATTAAGATCTCACAATGTTTCTCAAATCAGCACTGGCCTCTACCACACCGTGGTAGTCACTAACCGCGGACAAATATTTGGTTTTGGCGACAATGAAAGAGCTCAACTTGGTCATGATACATTAAGAGAATGCCTTGAACCTATTGAAATTTTCATAGAAAATTCATCATCTGAAGAAAATGTTGATCCTATGTTATAA 1464 0.4214 MGKNHFEELPSHLILEILCSGKLSAIDLVCLEFASKTFGARNDLCDLKFKSLVDFAAFQLCGSHATFSMIGLNSQKDLYDRCGGKWKRVLRFLESVEQSSNMVETSSGNMQITAGKYHTLAISNSSVYSCGSSLCGVLGQGSETTQCSTFTRINFPPLARVAHVSASYNHAAFVMQSGEVFTCGDNSSSCCGHSDTNRPIFRPRLVESLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNSHGQLGHGDAQDRPSPKKIEFLGKVGPIVQVAAGPSYILSVTEDGSVYSFGSGGNFCLGHGEQHDELLPRLIHKFRRNGIHIVQVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTRPELLSSLKNHLAVQVCARKRKTFVLLDSGLVYGFGSMGFGSLGFLDRKLTDKILKPRILNSLRSHNVSQISTGLYHTVVVTNRGQIFGFGDNERAQLGHDTLRECLEPIEIFIENSSSEENVDPML 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03216 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 178 230 IPR000408 -
Trre11g03216 487 Pfam Regulator of chromosome condensation (RCC1) repeat 428 456 - -
Trre11g03216 487 Gene3D - 93 263 IPR009091 -
Trre11g03216 487 Gene3D - 264 484 IPR009091 -
Trre11g03216 487 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Trre11g03216 487 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 324 334 IPR000408 -
Trre11g03216 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 231 283 IPR000408 -
Trre11g03216 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 444 IPR000408 -
Trre11g03216 487 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 158 472 - -
Trre11g03216 487 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Trre11g03216 487 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Trre11g03216 487 PRINTS Chromosome condensation regulator RCC1 signature 321 334 IPR000408 -
Trre11g03216 487 PRINTS Chromosome condensation regulator RCC1 signature 431 447 IPR000408 -
Trre11g03216 487 PRINTS Chromosome condensation regulator RCC1 signature 447 461 IPR000408 -
Trre11g03216 487 SUPERFAMILY RCC1/BLIP-II 104 408 IPR009091 -
Trre11g03216 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 389 IPR000408 -
Trre11g03216 487 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 284 337 IPR000408 -
Trre11g03216 487 Pfam Regulator of chromosome condensation (RCC1) repeat 231 274 IPR000408 -
Trre11g03216 487 Pfam Regulator of chromosome condensation (RCC1) repeat 177 227 IPR000408 -
Trre11g03216 487 Pfam Regulator of chromosome condensation (RCC1) repeat 337 378 IPR000408 -
Trre11g03216 487 Pfam Regulator of chromosome condensation (RCC1) repeat 283 334 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03216 Trre-Chr11 43827973 43832796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03216 - - gmx:100782653 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03216 11 43827973 43832796 Trre11g03216 11 43827973 43832796 ECH