Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03206 ATGGCTGATCGTTTCTTTCCGAACGACTTGCCACCATTCGTGGAAGAGACCATACTTGAAGAAGCAACTTCTTCCCAAACACCAACACCACACTCTCTCACCTCACTCCTTTCTCTACCTTACACAACACTCACCTCAAAGCTTCAAGCCGCAGCACTTCACTTCAAACAATCGGTGGTGAATGAGACATGGGGTTCAAGTAGGAACCGTGTGAAGGACTATACTCTTTATACTGGGGTTCTTGGAACAGCATATCTGGTTTTTAAGGCTTATCAAGTAACCAAGAATGTGGATGATCTTAACTTATGCTTGAAGATTGTTAAGGCTTGTGATTCTGCTTCAGAAAATTCAAGCCGTGTGACGTTCATCTGTGGTCGTGCTGGTGTTTGTGCTCTTGGTGCTGTCATAGCTAAGCATGCTGGTGATGAGAGATTACTTGACTATTACCTTAGAAAATTCAAAGAGATTGAGTTGCCCTGTGATTTGCCCTATGAGGTCTTGTATGGCAGAGCAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATAGACAAAGACACAATACCTAGTAATCACATGAGACCAATTGTGGATGAAGTTATAACATCGGGTAGAAAATTGGCTCACAAGGGAAGATGTCCTTTGATGTATGAATGGCATGGGAAGAAATACTGGGGTGCTGCTCATGGACTTGCAGGAATCATGAATGTTTTGATGGACATGGAACTCAAGCCTGACGAGGTTGAAGATGTCAAGGGTACACTACGCTACCTGATTAAGAATCGGTTCTCGAGTGGTAATTATCCCTCCAGTGAAGGAAGTGAATCTGACCGTCTTGTGCATTGGTGTCATGGTGCTCCCGGAGTAGCTCTTACGCTTGTAAAAGCAGCTGAGATTTATGGGGATAAGGAATTTTCGCAAGCAGCTGAAGAGGCAGGTGAAGTAGTATGGAAGAGGGGTCTTCTTAAGCGAGTTGGAATTTGCCACGGCATCAGTGGGAACACCTATGTCTTTCTTTCTCTTTACAGATTGACAGGAAACAAGGAGTACTTGTACAGGGCTAAAGGATTTTCTTGCTTTCTACTTGATAGAGCGCAAAAATTGATCGCTGAAGGAAAGATGCACGGGGGAGATCGTCCTTTTTCGTTATTCGAAGGTCTTGGAGGAATGGCTTATACCTTTCTAGACATGATTGATCCACAAGTTTCAAGGTTCCCTGGCTATGAACTTTAA 1236 0.4353 MADRFFPNDLPPFVEETILEEATSSQTPTPHSLTSLLSLPYTTLTSKLQAAALHFKQSVVNETWGSSRNRVKDYTLYTGVLGTAYLVFKAYQVTKNVDDLNLCLKIVKACDSASENSSRVTFICGRAGVCALGAVIAKHAGDERLLDYYLRKFKEIELPCDLPYEVLYGRAGYLWACSFLNKHIDKDTIPSNHMRPIVDEVITSGRKLAHKGRCPLMYEWHGKKYWGAAHGLAGIMNVLMDMELKPDEVEDVKGTLRYLIKNRFSSGNYPSSEGSESDRLVHWCHGAPGVALTLVKAAEIYGDKEFSQAAEEAGEVVWKRGLLKRVGICHGISGNTYVFLSLYRLTGNKEYLYRAKGFSCFLLDRAQKLIAEGKMHGGDRPFSLFEGLGGMAYTFLDMIDPQVSRFPGYEL 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03206 411 CDD euk_LANCL 76 407 - -
Trre11g03206 411 FunFam LanC-like protein 2 1 411 - -
Trre11g03206 411 Pfam Lanthionine synthetase C-like protein 71 411 IPR007822 GO:0031179
Trre11g03206 411 Gene3D - 1 411 IPR012341 GO:0005975
Trre11g03206 411 PANTHER LANC-LIKE PROTEIN 1 411 - -
Trre11g03206 411 PRINTS LanC-like protein superfamily signature 381 398 IPR007822 GO:0031179
Trre11g03206 411 PRINTS LanC-like protein superfamily signature 73 91 IPR007822 GO:0031179
Trre11g03206 411 PRINTS LanC-like protein superfamily signature 280 300 IPR007822 GO:0031179
Trre11g03206 411 PRINTS LanC-like protein superfamily signature 326 339 IPR007822 GO:0031179
Trre11g03206 411 PRINTS LanC-like protein superfamily signature 164 179 IPR007822 GO:0031179
Trre11g03206 411 PRINTS LanC-like protein superfamily signature 225 241 IPR007822 GO:0031179
Trre11g03206 411 SMART LANC_like_2 70 411 IPR007822 GO:0031179
Trre11g03206 411 PRINTS Eukaryotic LanC-like protein family signature 260 275 IPR020464 -
Trre11g03206 411 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Trre11g03206 411 PRINTS Eukaryotic LanC-like protein family signature 297 318 IPR020464 -
Trre11g03206 411 PRINTS Eukaryotic LanC-like protein family signature 342 360 IPR020464 -
Trre11g03206 411 PRINTS Eukaryotic LanC-like protein family signature 214 226 IPR020464 -
Trre11g03206 411 SUPERFAMILY LanC-like 67 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03206 Trre-Chr11 43646912 43649354 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03206 - - gmx:100786158 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03206 11 43646912 43649354 Trre11g03206 11 43646912 43649354 ECH