Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03205 ATGGCCCTTCAAGCTGCTTCTTTGCTTCCTGCTTCTTTCTCCATTCCTAAAGAGGGAAAGATTGGTGCATCTCTTAAGGACTCAACTCTTTTTGGTGTTTCATTGTCTGAATCTTTGAAAGGTGACTTTAGCTCTTCTGCATTGAGGTGCAAGAGGGACTTGCGACAAAGGGTCGGTGCTGTGAGGGCAGAGACAGCGGCTACAGCCACTCCATCAGTTACCAAGTCATCACCTGATGGCAAGAAAACATTGAGGAAAGGAAATGTTGTGATCACTGGTGCTTCATCTGGATTAGGTTTGGCTACTGCTAAGGCTTTGGCTGAGACAGGAAAATGGCATGTAATTATGGCTTGCAGGGATTTCCTTAAAGCTGCAAGAGCTGCAAAATCTGCTGGAATGGCTAAGGAAAACTACACAATCATGCACTTAGACCTTTCCTCTCTTGACAGTGTTCGCCAATTCGTCGATAACTTCAGACGAGCTGAGATGCCACTGGATGTGCTTGTTAACAATGCTGCTGTTTACTTGCCAACTGCTAAGGAACCTACATTCACTGCTGATGGATTTGAACTTAGCGTTGGGACAAATCATCTCGGCCATTTTCTTCTTTCGCGCCTTTTGCTTGAGGACATGGGCAAATCTGATTACCCTTCAAAGCGTTTGATCATTGTTGGCTCAATCACAGGTAACACAAACACATTGGCCGGAAATGTACCTCCAAAAGCTAACCTCGGTGACCTGAGAGGACTTTCTGGTGGCTTGAATGGGCTTAACAGTTCTGCCATGATAGATGGTGGAGATTTTGATGGTGCCAAGGCATACAAAGACAGCAAAGTGTGTAACATGCTTACAATGCAAGAATTCCATAGAAGATACCATGAGGAAACTGGAATCACATTTGCTTCCCTTTACCCTGGTTGCATTGCCACAACAGGCTTGTTTAGGGAGCACATTCCTTTGTTCAGAACTTTGTTCCCTCCATTCCAAAAGTACATAACCAAAGGCTACGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGGTTGTATGTGATCCAAGCTTAACCAAATCTGGTGTTTACTGGAGCTGGAATAAAGCTTCTGCTTCATTCGAAAATCAGCTATCTCAAGAGGCCAGTGATGTAGAGAAGGCTCGCAAAGTGTGGGAGGTTAGTGAGAAGCTTGTTGGTTTGGCCTAA 1200 0.4483 MALQAASLLPASFSIPKEGKIGASLKDSTLFGVSLSESLKGDFSSSALRCKRDLRQRVGAVRAETAATATPSVTKSSPDGKKTLRKGNVVITGASSGLGLATAKALAETGKWHVIMACRDFLKAARAAKSAGMAKENYTIMHLDLSSLDSVRQFVDNFRRAEMPLDVLVNNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLEDMGKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLSGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGYVSEDEAGKRLAQVVCDPSLTKSGVYWSWNKASASFENQLSQEASDVEKARKVWEVSEKLVGLA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03205 399 NCBIfam protochlorophyllide reductase 85 399 IPR005979 GO:0016630
Trre11g03205 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 83 366 IPR036291 -
Trre11g03205 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
Trre11g03205 399 CDD LPOR_like_SDR_c_like 86 398 - -
Trre11g03205 399 Gene3D - 74 399 - -
Trre11g03205 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Trre11g03205 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Trre11g03205 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Trre11g03205 399 PANTHER PROTOCHLOROPHYLLIDE REDUCTASE C, CHLOROPLASTIC 1 399 IPR005979 GO:0016630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03205 Trre-Chr11 43634216 43636384 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03205 K00218 - gmx:100785637 697.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03205 11 43634216 43636384 Trre11g03205 11 43634216 43636384 ECH