Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03204 ATGAACAAAACCATCCTGGTTTCATCATCATCTTCTTCTCCCCAACAACAACAACAACAACAAGACCAAGACGATTTCTTCTACGAATCACACGACCGTTTACTCTCTTCTTCTTGCTCTTGTTCTAACTCCAACTCCGAAGACGAAGAACAAGACCAAGACCAAAACAACAACAATCATATTCACAATTACAATTTTGCCCTTAACAGTTACGACATATGGATCTCTCAACCTTCTTCCGTTTCCGAACGTCGTTCTCGTCTACTCCAAACCATAGGTTTGTCATCCGACCCTGCTCTCTCTCGTGGTAACCCTCTCTCACCCTACAATGCCATCTTCCGATCCAAATCTGACGGCAGTTACAACAATAACCACACTTCTAACAACTATCTCTCTCTTGATAACAACTCTTCTTCTTCTTCATCTTCTTTTGTAAATAATAACTGTATTCCCGTTAATTGCGGCGGATCCCCCGGGAAACCACCATCTGGAAAGAATTCTACTAGAACAACTCATTCCGGTGCTGATTTTACTGCTTCTACAGCGCCGGAGACGACGACAACAACGACGGTGGCAGCGGCAGAGATTGTGGTTTCCGGTGAAATAAAGTGTGATGAAATTGAAACAGGTGAAGAGGAACAAGCTTGTACTATTAGAGATCTTGATAATGGAAAAGAGTTTGTTGTGAAAGAAATTAGAGAAGATGGAATGTGGAATAAAGTGAAGGAAGTTGCTACTGGTAGACAGTTGACTATGGAGGAATTCGAGATGACGGTCGGTCATTCTCCCATTGTGCAGGAGCTTATGCGTCGGCAGAATCACGAGGATGCCGGAGATGGAAGCATTGGTGGTAGCGGTGGTGGTAGTGGTGGTGGTGGAATTAACAGTAATGGGAGTATTAATTCTAAGGGGAAGAAGAAAGGAGGGAGTTGGTTGAAGAGTATTAAGAGTGTAGCTAGTTCAATGGCAGGTCATAAGGAAAGGCGGAGTAGTGATGAGAGAGATACTTCGTCGGAGAAAGGTGGTAGACGGTCGAGTTCGGCTACTGATGATAGTCAGGATGGTTCATTTCATGGACCTGAGAGGGTGAGAGTGAGACAGTATGGAAAATCATGTAAAGAGTTAACTGCATTGTTTAAGAGTCAAGAGATTCAAGCGCATAATGGATCAATTTGGTGTATTAAATTTAGTTTAGATGGGAAATATCTTGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAATGTGAGAGGAAAGGGGAGTTGTTGCTTATGGAGAAACAGGAAGATGTTAATGTTAATATGTTGTTTCTTGTTAATGGGTCGCCGGAACCCGCGTCGTTGTCTCCTTTGGCGGATAATCATGCGGAAAGGAAGAGAAAAGGGAGGTCGTCCATTAGTAGGAAATCCGTGAGCTTGGACCAGTTTGTGGTCCCTGAAAATGTGTTTGCACTTACCGAAAAACCCATTTGCTCCTTTCAGGGTCATTTACATGATGTGCTTGATCTGTCTTGGTCTAAGTCTCAGCACTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTATCTAGCAAGTCTTGTTTGAAGATTTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGTCAAGTTGTTGATTGGATTGATCTTCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGAGCACTAGTTGGTTCATACAAGGGTAGCTGTCATTTATATAATACATCCGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCAAATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTTCGTCAGAAGTACTTATCACGTCTGCTGATTCTCGAGTTCGTGTTGTTGATGGCATTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCAAGTAGCCAGATTTCAGCCTCCCTCACAGCAAATGGTAAATATATTGTTGCAGCAAGTGAGGATTCCCATGTATACATCTGGAAAAACGAAGCTGATTGCAGGCCTAACAGAAATAAAGGTGTCACCGTGACACAGTCGTATGAACATTTTCACTGTAAAGATGTGTCAGTAGCCATTCCCTGGCCTGGTGTGGGTGATACATGGGACATGCATGATACATTTTCTGCAGAACAACCTGAGCATGATAGTAGGAACAACGACGAAATCTCATCAGCCAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGGTGTCGAGGGTTCACGAGCTGCTTCAGGTTACCATAGTCCACATCATGCAACCATTGCGAGTGCGACAAATAGTTACTTTTTTGATCGAATTTCTGCAACATGGCCAGAGGAAAAACTTCTTCTAGCCACAAGAAATCAAAGCCCTCGTGTCAGTATGGATTTCTCAAATGGGGTAAGTCAAAAAATGTCAGCATGGGGTATGGTGATTGTTACTGCCGGTCTTCGAGGTGAGATTAGAACTTTCCAAAATTTTGGATTGCCACTGCGAATATAA 2616 0.4274 MNKTILVSSSSSSPQQQQQQQDQDDFFYESHDRLLSSSCSCSNSNSEDEEQDQDQNNNNHIHNYNFALNSYDIWISQPSSVSERRSRLLQTIGLSSDPALSRGNPLSPYNAIFRSKSDGSYNNNHTSNNYLSLDNNSSSSSSSFVNNNCIPVNCGGSPGKPPSGKNSTRTTHSGADFTASTAPETTTTTTVAAAEIVVSGEIKCDEIETGEEEQACTIRDLDNGKEFVVKEIREDGMWNKVKEVATGRQLTMEEFEMTVGHSPIVQELMRRQNHEDAGDGSIGGSGGGSGGGGINSNGSINSKGKKKGGSWLKSIKSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDGSFHGPERVRVRQYGKSCKELTALFKSQEIQAHNGSIWCIKFSLDGKYLASAGEDCVIHVWQVVECERKGELLLMEKQEDVNVNMLFLVNGSPEPASLSPLADNHAERKRKGRSSISRKSVSLDQFVVPENVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSNHKKITGFQFAPGSSSEVLITSADSRVRVVDGIDLVHKFKGFRNASSQISASLTANGKYIVAASEDSHVYIWKNEADCRPNRNKGVTVTQSYEHFHCKDVSVAIPWPGVGDTWDMHDTFSAEQPEHDSRNNDEISSANHPPTPVEENFGVEGSRAASGYHSPHHATIASATNSYFFDRISATWPEEKLLLATRNQSPRVSMDFSNGVSQKMSAWGMVIVTAGLRGEIRTFQNFGLPLRI 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03204 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 497 531 - -
Trre11g03204 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 417 - -
Trre11g03204 871 PANTHER WD REPEAT DOMAIN 44 18 868 IPR040324 -
Trre11g03204 871 Pfam WD domain, G-beta repeat 667 705 IPR001680 GO:0005515
Trre11g03204 871 Pfam WD domain, G-beta repeat 533 570 IPR001680 GO:0005515
Trre11g03204 871 Pfam WD domain, G-beta repeat 383 415 IPR001680 GO:0005515
Trre11g03204 871 Pfam WD domain, G-beta repeat 492 527 IPR001680 GO:0005515
Trre11g03204 871 Gene3D - 372 729 IPR015943 GO:0005515
Trre11g03204 871 MobiDBLite consensus disorder prediction 290 304 - -
Trre11g03204 871 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Trre11g03204 871 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Trre11g03204 871 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Trre11g03204 871 MobiDBLite consensus disorder prediction 1 61 - -
Trre11g03204 871 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 537 571 - -
Trre11g03204 871 MobiDBLite consensus disorder prediction 322 347 - -
Trre11g03204 871 SMART WD40_4 490 528 IPR001680 GO:0005515
Trre11g03204 871 SMART WD40_4 624 663 IPR001680 GO:0005515
Trre11g03204 871 SMART WD40_4 573 611 IPR001680 GO:0005515
Trre11g03204 871 SMART WD40_4 531 570 IPR001680 GO:0005515
Trre11g03204 871 SMART WD40_4 664 705 IPR001680 GO:0005515
Trre11g03204 871 SMART WD40_4 377 416 IPR001680 GO:0005515
Trre11g03204 871 MobiDBLite consensus disorder prediction 1 24 - -
Trre11g03204 871 MobiDBLite consensus disorder prediction 754 792 - -
Trre11g03204 871 SUPERFAMILY WD40 repeat-like 381 707 IPR036322 GO:0005515
Trre11g03204 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 497 537 IPR001680 GO:0005515
Trre11g03204 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 417 IPR001680 GO:0005515
Trre11g03204 871 MobiDBLite consensus disorder prediction 274 363 - -
Trre11g03204 871 FunFam Transducin/WD40 repeat-like superfamily protein 342 446 - -
Trre11g03204 871 FunFam WD repeat-containing protein 44 478 744 - -
Trre11g03204 871 MobiDBLite consensus disorder prediction 160 186 - -
Trre11g03204 871 ProSiteProfiles Trp-Asp (WD) repeats profile. 537 571 IPR001680 GO:0005515
Trre11g03204 871 MobiDBLite consensus disorder prediction 155 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03204 Trre-Chr11 43626409 43631427 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03204 K20241 - aew:130751775 1056.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03204 11 43626409 43631427 Trre11g03204 11 43626409 43631427 ECH