Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g03183 ATGGCCAACTTCCTCGCTCAGTTCCAAACCATTAAGAATTCCTCCGATCGCCTCGTCATTTCCGTGGAGGATGTGAGTGATTTATGGCCAACTGTCAAGCCTGCTTTTGAAGGGCGGTTGCCGTTCAAAAGGGCGAGTTTGAATAACAAGACGAGGAACCCTGTTTTGGTTGAGAAGTTGCCGGCTGAGTTCATATTAACTACAGATTCAAGGCTCCGTAGCCGGTTTCCTCAGGAGCAGTTGTTGTTTTGGTTTCGAGAGCCATATGCAACTGTTGTGCTTGTTACGTGTGAGGATCTTGATGAGTTCAAAACCATCCTTAAACCACGCCTGAAATTAATTGTCCAGAATGATGAAAGGGAATGGTTTATTGTATTTGTATCTAAAGCTCATCCAGCTAATGATCAGGCAACCAAAATGGCAAAGAAAGTATATGCTAAACTTGAAGTTGATTTTAGCTCCAGAAAAAGAGAAAGATGCTGCAAATATGATATACATTTCCCTGAAGCAAATTTTTGGGAGGATCTGGAATCAAAGATAATGGAATGCATCAGAAATACACTGGATAGGCGTGTACAGTTTTATGAAGATGAGATACGGAAGCTCAGTGAACAGCGCCTCATGCCTGTCTGGAACTTCTGTAATTTTTTCATTCTGAAGGAAAGCTTGGCCTTTATCTTTGAAATGGCCCACCTTCATGAAGATGCCTTACGGGAATATGATGAACTAGAACTTTGCTATCTTGAAACAGTTAACATGACTGGAAAGCAAAGAGACTTTGGTGGGGCAGACCATGGTGACGATCAGGCAGCAATTATTAATCCAGGAAACAAAGCATTGACACAAATTGTCCAAGACGATTCGTTTAGGGAGTTTGAATTCCGACAGTATCTGTTCTCCCGTCAATCAAAGCTCTTATTCAAGCTAAATCGACCTATTGAGGTAGCATCACGAGGTTATTCATTCATATTAAGCTTCTCAAAATCCTTGGCATTGCATGAGCGTATTCTGCCTTTTTGTATGCGTGAAGTCTGGGTGATAACTGCTTGCTTGGCGTTAATTGAAGCTACCACTTCCAACTATAGTGATGGACTTGTGGCAGCCGACGTAGAGAAGGAGTTCTTTCGTCTTCTTGGTGACCTATATTCACTAGCCAGAGTTAAGTTCATGAGGCTAGCATATTTAATTGGGTATGGATCTGATATAGAAAGAAGTCCTGTTAACAGTGCTTCCCTTAGCTTGCTACCTTGGCCTAAGCCAGCTGTTTGGCCTTCAGTTCCTGCTGATGCATCAGCAGAGGTGCTTGAGAAAGAAAAGTTGATTCTCCAAACAACTCCTGCAACCAAGCACTTTGGTATCCAGAGGAAACCCCTGCCCCTTGAACCTACTGTGCTTCTACGAGAGGCCAACAGGCGGAGGGCTTCACTTTCTGCTGGAAATGTTTTTGAAATGTTTGACAGTCGCCAGGGTCCAATGGAAGGATCAGGTTTTGATGCATCCCCCAAGATGTCACCACAAAAAGTACTTTCGAATTCGATGACACGCACTAATTCTTCTCCGGGAAACTTTGATGGCTCAATTGACCGACCTATGAGGCTTGCCGAGATTTATATTGCTGCTGAACATGCTTTGAAGAAAACCATTTCTAATTTTGAGATGTTAAAATCATTATCATCATCCGAGGAGTTTGAGAAAAAATATCTAGAGCTAACTAAAGGTGCTGCTGACAATTACCACCGTTCCTGGTGGAAAAGACATGGAGTTGTCCTTGATGGTGAGATAGCTGCTGTTGCCTTTAAACATGGACATTTTGACCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCACTGTATAATGGGGAAGGATGGCAGGAGTTGTTGGCTGAGGTCCTTCCCATTCTAGCTGAGTGTCAGAAGATTCTTAATGATCAAGCGGGCTACTTGCTATCCTGTGTGCGGTTACTTTCTCTTGAAGATGGATTATTTGTGACGAAGGAGCGTCAAGCTTTTCAGGCAGAAGTGGTTCGTCTTGCCCATAGTGAAATGAAGGACCCTGTTCCTCTTGATGTATCATCATTAATTACATTTTCTGGAAATCCTGGGCCTCCATTGGAGTTGTGCGATAGGGATCCTGGTATCCTTTCTGTAACTGTCTGCAGTGGTTTTCCAGATGATATAACTCTCGACTCAATCAGTCTTACATTAATGGCAACATCCAATGCAGATGAAGGTGTAAAGGCGTTGAAGAGTTCTACAGCCATTGTGTTACACCCTGGTCGGAATACTATTACCTTGGATTTACCACCTCAGAAACCAGGATCATATGTTCTTGGAGTTCTCACTGGGCAGATTGGGCAGTTGAGGTTTAGATCTCACGGGTTTTCAAAAGTTGGTCCTGCAGAGAGCGATGATGTTATGAGTTATGAAAAGCCAGCCAAACCCATTTTGAAGGTTTCCAAACCTAGAGCCCTTGTTGATCTTGATGCTGCTGTTTCATCTGCTTTGTTAATAAATGAACACCAATGGGTTGGCATTTTAGTCCGGCCATTAAATTACTCCCTAAAGGCTGCTGTCTTGCATATTGATACTGGTCCGGGATTGGAGATTGAAGAGACACACATAATTGAGATGGAAAGCTATGCTGGTGTATCAGAGAATGATGATGACGAGGTGCAGAAAGACGGTGCTGAAATAGATTCTTTGAATTCTGAGAAAAAGTTTGAACGGTCGACTCTTAATGATGGTAAAATTGTGTTTCCAAATTGGGCAAGCGACACTCCTTCTATACTTTGGGTTCTAATTCGTGCCATCAGTGACACGCTGAACAGAGGATCATCTTCAGTCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTAAAACTTGAATTTGGAGCATTCCACAATCAGATATTTGAAAGGACCCTAGCAGTGCATTTTACACATCCTTTCTATGTGAGGACACGTGTTACTGATAAATGCAATGATGGTACCCTGCTTCTGCAGGTAATACTTCACTCTGAAGTAAAGGCTACATTGACCATATACGATGCTTGGCTTGATCTTCAAGATGGATTTGTTCATTCTGGACAAACTGAGGGTAGACCTAATTCAAGCTTCTTCCCACTAATCATATCTCCCACTTCCAAAGGAGGAATTTTGTTTAGTATCTCCCTAGATAAGACAGATGCAGAAGAAGCCGTGAAGCAACCAGAAAGCATATTAAATATCAAATATGGAATTTCTGGTGATAGAACAATTGGAGCCCATCCTCCTTTTATAAATGAATCTACTGGAGTTGATGGTGCTAGACAGGAGTTGATCTTCAAGAGTGTAATTGTTTTGCAAAGGCCTGTGCTTGATCCATGCCTAGCAGTTGGTTTTCTTCCTCTCCCTTCAGATGGCATAAGAGTTGGACAACTAGTTAAGATGCAGTGGAGGGTGGAAAGGTTGAAGGATTTGAATGAGAAAGAAATTTCTGAACAGAATGATGAGGTGCTGTATGAGGTAAATGCAAATTCTGGTAATTGGATGATTGCTGGAAGGAAAAGAGGGCATGTATCTCTCTCAAAAAATCAAGGTTCAAGGATAATTATCACAGTATTATGCATGCCACTGGTCGCTGGTTATGTGCGTCCCCCTCTACTTGGGCTGCCGGAAATTGACGAGGCAAATATAAGGTGCAAACCGTCCGGACCACATCTAGTTTGTGTTTTGCCACCAACGCTCAGTTCATCCTTCTGCATTCCAGTTAATTCATGA 3774 0.4245 MANFLAQFQTIKNSSDRLVISVEDVSDLWPTVKPAFEGRLPFKRASLNNKTRNPVLVEKLPAEFILTTDSRLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDEREWFIVFVSKAHPANDQATKMAKKVYAKLEVDFSSRKRERCCKYDIHFPEANFWEDLESKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFIFEMAHLHEDALREYDELELCYLETVNMTGKQRDFGGADHGDDQAAIINPGNKALTQIVQDDSFREFEFRQYLFSRQSKLLFKLNRPIEVASRGYSFILSFSKSLALHERILPFCMREVWVITACLALIEATTSNYSDGLVAADVEKEFFRLLGDLYSLARVKFMRLAYLIGYGSDIERSPVNSASLSLLPWPKPAVWPSVPADASAEVLEKEKLILQTTPATKHFGIQRKPLPLEPTVLLREANRRRASLSAGNVFEMFDSRQGPMEGSGFDASPKMSPQKVLSNSMTRTNSSPGNFDGSIDRPMRLAEIYIAAEHALKKTISNFEMLKSLSSSEEFEKKYLELTKGAADNYHRSWWKRHGVVLDGEIAAVAFKHGHFDQAAKSYEKVCALYNGEGWQELLAEVLPILAECQKILNDQAGYLLSCVRLLSLEDGLFVTKERQAFQAEVVRLAHSEMKDPVPLDVSSLITFSGNPGPPLELCDRDPGILSVTVCSGFPDDITLDSISLTLMATSNADEGVKALKSSTAIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGQLRFRSHGFSKVGPAESDDVMSYEKPAKPILKVSKPRALVDLDAAVSSALLINEHQWVGILVRPLNYSLKAAVLHIDTGPGLEIEETHIIEMESYAGVSENDDDEVQKDGAEIDSLNSEKKFERSTLNDGKIVFPNWASDTPSILWVLIRAISDTLNRGSSSVTTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTHPFYVRTRVTDKCNDGTLLLQVILHSEVKATLTIYDAWLDLQDGFVHSGQTEGRPNSSFFPLIISPTSKGGILFSISLDKTDAEEAVKQPESILNIKYGISGDRTIGAHPPFINESTGVDGARQELIFKSVIVLQRPVLDPCLAVGFLPLPSDGIRVGQLVKMQWRVERLKDLNEKEISEQNDEVLYEVNANSGNWMIAGRKRGHVSLSKNQGSRIIITVLCMPLVAGYVRPPLLGLPEIDEANIRCKPSGPHLVCVLPPTLSSSFCIPVNS 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g03183 1257 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 8 1254 IPR045126 GO:0048193|GO:1990071
Trre11g03183 1257 MobiDBLite consensus disorder prediction 504 524 - -
Trre11g03183 1257 Coils Coil 185 205 - -
Trre11g03183 1257 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1139 1216 IPR022233 -
Trre11g03183 1257 MobiDBLite consensus disorder prediction 493 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g03183 Trre-Chr11 43288757 43302230 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g03183 K20307 - gmx:100787264 2269.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g03183 11 43288757 43302230 Trre11g03183 11 43288757 43302230 ECH