Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02669 ATGGCAACGCACACCCCAAAAAATATCCTGATTACCGGGGCAGCTGGATTCATTGCATCTCATGTTGCCAACCGGCTAATCCGGAATTATCCTGACTACAAAATTGTTGTGCTCGACAAACTTGATTACTGTTCTAATCTGAAGAACCTCATTCCTTCAAAATCATCTCCTAACTTCAAGTTTGTGAAGGGAGACATTGAAAGTGCTGATCTTGTCAACTACCTTCTCATTACCGAGTCTATCGACACAATTATGCACTTTGCTGCTCAAACTCATGTTGACAACTCTTTCGGTAATAGTTTTGAGTTCACCAAGAACAACATATATGGTACTCATGTCTTATTAGAAGCCTGCAAGGTAACGGGACAGATCAAAAGGTTCATCCATGTAAGCACTGACGAGGTCTATGGAGAGACAGATGAGGATGCCGTTGTTGGAAACCATGAAGCTTCTCAGCTACTTCCGACAAATCCATACTCTGCAACTAAAGCTGGGGCAGAAATGCTTGTCATGGCCTATGGTAGGTCGTATGGACTACCTGTGATCACAACACGCGGAAACAATGTCTATGGCCCGAACCAGTTTCCTGAAAAGCTAATTCCAAAGTTCATCCTTTTGGCAATGCAAGGCAAAGTTCTTCCGATTCATGGTGATGGTTCAAATGTGAGGAGTTATTTATATTGTGAAGATGTTGCAGAGGCTTTTGAAGTTATCCTTCATAAGGGAGAGGTTGGACATGTTTACAATATTGGAACAAAAAAGGAAAGGCGTGTTATTGATGTAGCCACAGATATATGCCGACTCTTCTCGATGGATCCAGAGACTAGCATAAAGTTTGTAGAGAACAGACCGTTTAATGATCAGAGGTACTTTCTTGACGACCAAAAGTTGAAGGTTTTGGGTTGGTCGGAGAGAACAACATGGGAAGAAGGCTTGAAGAAAACCATGGATTGGTATATCAACAATCCTAATTGGTGGGGTGATGTGAGCGGTGCATTGCTTCCTCATCCATGGATGTTAATGATGCCTGGTGGTATGGAGAGACATTTCGACGGATCTGAAGAAGAAAATTCTGCAAACTATGTGTCAAGTACGAATACTCGAATGGTGGTTCCACCAACCAAGAACATTGGCTCCTCACAAAAACCTCCTCTCAAGTTCTTGATCTATGGCAGAACAGGTTGGATCGGTGGTCTGCTGGGGAAACTGTGTGAGAAGCAAGGGATTCCTTATGAGTATGGAAAAGGGCGCCTTGAGGATCGTTCATCACTTGTGGCTGATATTCAGAATGTGAAGCCAACTCATATTTTCAATGCAGCAGGAGTGACCGGAAGACCTAATGTTGATTGGTGTGAATCTCATAAAACTGAAACCATCCGTGTCAACGTTGCTGGGACTTTAACATTGGCTGACGTAAGCAGAGAGCATGATCTTTTGATGATAAACTATGCTACTGGATGCATATTCGAGTACGATGAAGCTCATCCAGAAGGTTCAGGCATTGGTTTTAAGGAGGAAGACACACCTAATTTCACCGGTTCTTTCTATTCCAAAACTAAGGCTATGGTTGAAGAGCTCTTGAAAGAATATGATAATGTATGCACGCTTAGGGTTCGCATGCCGATATCATCTGACCTAAGCAATCCACGCAACTTCATCACCAAGATTTCTCGTTACAACAAAGTAGTTAACATCCCAAACAGCATGACTATTTTGGACGAACTTCTTCCTATTTCAATTGAGATGGCAAAGAGGAACTTAAGGGGTATCTGGAACTTCACAAATCCTGGTGCCGTGAGCCACAATGAGATTCTCGAGATGTACAGGGATTACATTGATCCAAACTTCAAGTGGGTTAACTTCACACTAGAAGAGCAAGCCAAAGTGATAGTTGCTGCAAGAAGCAACAATGAAATGGATGCATCCAAACTGAAAAGTGAGTTTCCAGAATTGCTTTCCATTAAGGAATCACTTATCAAGAATGTCTTTGAGCCAAACAAGAAAAGTGCTTAA 2013 0.4223 MATHTPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLIPSKSSPNFKFVKGDIESADLVNYLLITESIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIKRFIHVSTDEVYGETDEDAVVGNHEASQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFPEKLIPKFILLAMQGKVLPIHGDGSNVRSYLYCEDVAEAFEVILHKGEVGHVYNIGTKKERRVIDVATDICRLFSMDPETSIKFVENRPFNDQRYFLDDQKLKVLGWSERTTWEEGLKKTMDWYINNPNWWGDVSGALLPHPWMLMMPGGMERHFDGSEEENSANYVSSTNTRMVVPPTKNIGSSQKPPLKFLIYGRTGWIGGLLGKLCEKQGIPYEYGKGRLEDRSSLVADIQNVKPTHIFNAAGVTGRPNVDWCESHKTETIRVNVAGTLTLADVSREHDLLMINYATGCIFEYDEAHPEGSGIGFKEEDTPNFTGSFYSKTKAMVEELLKEYDNVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTILDELLPISIEMAKRNLRGIWNFTNPGAVSHNEILEMYRDYIDPNFKWVNFTLEEQAKVIVAARSNNEMDASKLKSEFPELLSIKESLIKNVFEPNKKSA 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02669 670 CDD dTDP_GD_SDR_e 7 324 IPR005888 GO:0008460|GO:0009225
Trre11g02669 670 Gene3D - 376 670 - -
Trre11g02669 670 Pfam GDP-mannose 4,6 dehydratase 10 315 IPR016040 -
Trre11g02669 670 FunFam UDP-glucose 4,6-dehydratase 9 213 - -
Trre11g02669 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 380 646 IPR036291 -
Trre11g02669 670 FunFam Bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 376 670 - -
Trre11g02669 670 CDD dTDP_HR_like_SDR_e 386 658 - -
Trre11g02669 670 Gene3D - 200 322 - -
Trre11g02669 670 Gene3D - 9 313 - -
Trre11g02669 670 Pfam RmlD substrate binding domain 386 556 IPR029903 -
Trre11g02669 670 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 3 337 - -
Trre11g02669 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 338 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02669 Trre-Chr11 33552374 33554557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02669 8 324 Miscellaneous Gene Families AT4G00110 27.139 2.82e-21 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02669 K12450 - gmx:100789909 1298.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02669 11 33552374 33554557 Trre11g02669 11 33552374 33554557 ECH