Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02498 ATGGAATCCATCCCTACTTCCATCAACAGTGGTTTGGGATGGAAATCATCTTCCTTCTTTCAACAATCCAATTTCTTCAACTTTCTTTCTCATCCTTTCAAACCAAAACACTCTCTCACCAAGTTTTCTCTCACTTGCTCTGCCACCTCTGATCCTCTCTTGGTTAAGGCTGCCAGGGGAGATCTTGTTAGTCGACCTCCAGCATGGATGATGCGTCAGGCAGGAAGGTACATGGCTGTTTACCAAAAGTTAGCTCAGAAACATCCATCCTTCCGAGAGAGGTCAGAGACGACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAAAGCTTTTAGGCCCGATGGAGTAATTATTTTCTCTGACATCCTTACACCTCTACCGGCATTTGGGATCAACTTTGACATAGAAGATGTAAAGGGACCTGTAATACAGTCACCTATCCGCTCCGAGGACGGATTAAAGGTTTTACACCCAATTGACTTCGACAAGCTTAGATTTGTAGGGGAATCACTTAAGATCCTGCGGCAAGAGGTTGGTGGCGATGCTGCTGCTTTAGGTTTTGTGGGGGCACCGTGGACATTGGCAACATATATAGTAGAAGGAGGTACAACACGCACATATACAAACATTAAGAGCATGTGTCATACAGCACCACACATACTGAAGACTCTACTTTCTCATTTGACAAAGGCGATAGCAGATTACATCGTTTTCCAAGTAGAATCTGGGGCTCACTGTATACAAATATTTGATTCGTGGGGTGGACAACTACCGCCTGATATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAGTGTCCAGAGACACCACTGGTTCTATATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGGTAGATACTGGAGTTGATGTTATTGGACTAGACTGGACAGTGGATATGGCTGACGGAAGAAGAAGATTGGGTAGCGGGATAGGCGTGCAAGGAAATGTGGATCCTGCTTACTTATTTTCTCCTCTTAATGCTTTGACAGAAGAAATTCAAAGGGTTGTAAGGTGTGCGGGACCTAGACGACACATCCTTAATCTCGGGCATGGTGTTCTTGTTGGCACACCTGAAGATGCTGTTGCACATTTCTTTGATGTAGCTAGGAGCTTGAAGTTTGACACTCTCACTCAAAATAACACTGCAAATGTAGCTTAA 1212 0.4381 MESIPTSINSGLGWKSSSFFQQSNFFNFLSHPFKPKHSLTKFSLTCSATSDPLLVKAARGDLVSRPPAWMMRQAGRYMAVYQKLAQKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGINFDIEDVKGPVIQSPIRSEDGLKVLHPIDFDKLRFVGESLKILRQEVGGDAAALGFVGAPWTLATYIVEGGTTRTYTNIKSMCHTAPHILKTLLSHLTKAIADYIVFQVESGAHCIQIFDSWGGQLPPDMWERWSKPYIKEIVNLVKKKCPETPLVLYINGNGGLLERMVDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLNALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEDAVAHFFDVARSLKFDTLTQNNTANVA 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02498 403 SUPERFAMILY UROD/MetE-like 51 389 IPR038071 -
Trre11g02498 403 ProSitePatterns Uroporphyrinogen decarboxylase signature 1. 67 76 IPR000257 GO:0004853|GO:0006779
Trre11g02498 403 Gene3D - 44 391 IPR038071 -
Trre11g02498 403 CDD URO-D 56 388 IPR006361 GO:0004853|GO:0006779
Trre11g02498 403 FunFam Uroporphyrinogen decarboxylase 43 391 - -
Trre11g02498 403 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 48 391 - -
Trre11g02498 403 Pfam Uroporphyrinogen decarboxylase (URO-D) 50 388 IPR000257 GO:0004853|GO:0006779
Trre11g02498 403 NCBIfam uroporphyrinogen decarboxylase 54 387 IPR006361 GO:0004853|GO:0006779
Trre11g02498 403 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 186 202 IPR000257 GO:0004853|GO:0006779
Trre11g02498 403 Hamap Uroporphyrinogen decarboxylase [hemE]. 50 390 IPR006361 GO:0004853|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02498 Trre-Chr11 30652862 30656859 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02498 K01599 - gmx:100807032 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02498 11 30652862 30656859 Trre11g02498 11 30652862 30656859 ECH