Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02479 ATGGCATCAATTGATGCACAGCTTAGACAATTAGTACCAGCAAAAGTTAGTGAAGATGATAAACTTATTGAGTATGATGCTTTGTTGTTGGATCGGTTTCTTGATATTCTTCAGGATTTACATGGAGAGGATCTGAAAGATTCTGTTCAAGAAGTGTATGAACTTTCTGCGGAGTATGAAAGAAAGCATGATCCTAAGAAACTTGAAGAGCTCGGAAATTTGATAACAAGTTTAGATGCAGGAGATTCAATTGTTGTTGCCAAGTCCTTTTCGCACATGCTTAACTTGGCCAACTTAGCTGAAGAGGTTCAGATTGCTCATCGTCGAAGGAACAAGTTGAAGAAAGGAGATTTTAGGGATGAGAGCAATGCAACTACTGAATCAGACATCGAAGAAACTCTTAAGAGACTTGTTTTTAACATGAAGAAATCTCCTCAGGAAGTTTTTGATGCATTGAAGAACCAGACCGTTGATCTGGTTCTTACTGCTCATCCTACTCAGTCGGTTCGTAGGTCGTTGCTTCAAAAGCATGGAAGGGTAAGGAACTGTTTATCTCAATTGTATGCTAAAGACATCACTCCTGATGATAAGCAAGAGCTTGATGAAGCTCTCCAGAGGGAGATTCAAGCTGCATTCCGTACCGATGAAATCAAGAGGACACCTCCAACACCACAAGATGAGATGAGAGCCGGGATGAGTTACTTCCATGAAACAATTTGGAAGGGTGTCCCTAAATTTCTTCGCCGTGTTGATACTGCGTTGAAGAACATAGGGATTAACGAACGTGTTCCCTACAATGCTCCTCTTATTCAGTTTTCTTCATGGATGGGGGGTGATCGTGATGGTAATCCGAGAGTCACTCCTGAAGTGACGAGAGATGTTTGCTTACTAGCTAGAATGATGGCTGCAAATTTGTATTATTCCCAGATTGAAGATCTTATGTTTGAACTGTCTATGTGGCGTTGCAATGATGAGCTGCGTGATCGCGCAGAAGAACTTCACAGGAATTCCAAGAAAGATGAAGTTGCAAAACACTACATAGAGTTTTGGAAAAAAATTCCTTTGAATGAACCATACCGTGTTATACTCGGTGATGTAAGGGACAAGCTCTATCGTACTCGTGAGCGGTCTCGTTATCTCTTAGCTCATGGCTATTCTGAAATTCCTGAGGAAGCCACATTCACCAATGTTGATGAGTTCTTGGAACCTCTTGAACTATGCTACCGATCACTTTGTGCTTGTGGTGATCGTGCGATTGCCGATGGAAGCCTTCTTGATTTCTTGAGGCAAGTTTCCACTTTTGGACTGTCACTGGTAAGACTTGATATAAGGCAAGAGTCTGATCGTCACACGGACGTGATGGATGCCATTACCAAACATTTGGAAATCGGATCCTACCAAGATTGGTCTGAAGAAAAAAGACAGGAATGGCTTTTGTCTGAGTTGGTTGGCAAAAGGCCGCTTTTTGGACCTGACCTACCTCAAACCGATGAAATTAGAGAAGTTTTAGAGACATTTCATGTCATAGCAGAACTTCCATCAGACAACTTTGGAGCCTATATCATTTCGATGGCAACTGCACCGTCTGATGTGCTGGCCGTTGAACTTCTTCAACGTGAATGCAAAATCAAGAATCCGTTAAGAGTTGTTCCATTGTTTGAGAAACTTGCTGATCTCGAGTCTGCTCCTGCTGCTTTGGCTAGGTTGTTTTCGATAGACTGGTACATAAACCGGATCGATGGGAAGCAAGAAGTTATGATTGGATATTCGGATTCAGGTAAAGATGCTGGAAGGTTTTCTGCCGCATGGCAGCTATATAAGGCTCAGGAAGACCTCATAAATGTTGCTCAGAAATACGGTGTTAAGTTAACAATGTTCCACGGTCGTGGTGGAACTGTTGGAAGAGGAGGTGGACCTACTCATCTTGCTATCTTGTCTCAACCACCAGACACAATTCACGGATCTCTTCGTGTGACGGTTCAAGGTGAAGTTATTGAACAGTCGTTCGGAGAGGAGCACTTGTGCTTTAGAACGCTGCAGCGTTTCACTGCTGCCACTCTAGAACACGGAATGCGTCCCCCAAGTTCTCCAAAACCGGAATGGCGTGAATTGATGGATCAGATGGCTGTCATTGCTACCGAGGAGTACCGTTCAATTGTGTTCAAGGAACCACGTTTTGTTGAGTATTTCCGTCTGGCTACACCAGAGATGGAGTACGGAAGGATGAACATTGGAAGTCGACCGGCAAAAAGAAGGCCAAGTGGAGGCATTGAAACACTGCGTGCGATACCATGGATTTTTGCATGGACACAGACAAGGTTTCATCTTCCAGTATGGCTTGGCTTTGGAGCAGCTTTTAAACAAGTTATTGCGAAGGATGTTAAGAATCTTCATATGCTGCAAGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACTATTGATTTAGTCGAAATGGTGTTCGCTAAGGGTGACCCTGGTATTGCAGCCCTGAATGATAGGCTACTAGTTTCTCAGGATCTTTGGCCATTTGGGGAACAGTTGAGAAGCAAATATGAAGAAACTAAGAAACTCCTACTTCAGGTGGCAACACACAAGGAAGTTCTTGAAGGAGATCCCTACTTGAAACAAAGACTCAGACTCCGTGATTCTTACATTACAACCCTTAACGTTTTCCAAGCATACACATTGAAACGGATCCGTGATCCAAACTATAAGGTGGAGGTGCGCCCCCGCGTATCGAAAGAATCTGCTGAAACAAGTAAATCGGCTGATGAACTTGTAACATTGAATCCAACAAGTGAATATGCTCCTGGTTTGGAAGACACACTCATTCTCACCATGAAGGGTATTGCTGCTGGCATGCAAAACACTGGTTAA 2880 0.4323 MASIDAQLRQLVPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKDSVQEVYELSAEYERKHDPKKLEELGNLITSLDAGDSIVVAKSFSHMLNLANLAEEVQIAHRRRNKLKKGDFRDESNATTESDIEETLKRLVFNMKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHGRVRNCLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIKRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRDRAEELHRNSKKDEVAKHYIEFWKKIPLNEPYRVILGDVRDKLYRTRERSRYLLAHGYSEIPEEATFTNVDEFLEPLELCYRSLCACGDRAIADGSLLDFLRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYQDWSEEKRQEWLLSELVGKRPLFGPDLPQTDEIREVLETFHVIAELPSDNFGAYIISMATAPSDVLAVELLQRECKIKNPLRVVPLFEKLADLESAPAALARLFSIDWYINRIDGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEDLINVAQKYGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEEHLCFRTLQRFTAATLEHGMRPPSSPKPEWRELMDQMAVIATEEYRSIVFKEPRFVEYFRLATPEMEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKQVIAKDVKNLHMLQEMYNQWPFFRVTIDLVEMVFAKGDPGIAALNDRLLVSQDLWPFGEQLRSKYEETKKLLLQVATHKEVLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYKVEVRPRVSKESAETSKSADELVTLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02479 959 PRINTS Phosphoenolpyruvate carboxylase signature 272 287 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 PRINTS Phosphoenolpyruvate carboxylase signature 159 172 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 PRINTS Phosphoenolpyruvate carboxylase signature 757 783 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 PRINTS Phosphoenolpyruvate carboxylase signature 625 654 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 PRINTS Phosphoenolpyruvate carboxylase signature 434 454 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 PRINTS Phosphoenolpyruvate carboxylase signature 212 228 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 PRINTS Phosphoenolpyruvate carboxylase signature 583 603 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 FunFam Phosphoenolpyruvate carboxylase 1 300 437 - -
Trre11g02479 959 Pfam Phosphoenolpyruvate carboxylase 27 959 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 Coils Coil 96 116 - -
Trre11g02479 959 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 17 959 IPR021135 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 25 959 IPR015813 GO:0003824
Trre11g02479 959 MobiDBLite consensus disorder prediction 911 930 - -
Trre11g02479 959 Coils Coil 323 343 - -
Trre11g02479 959 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 160 171 IPR018129 -
Trre11g02479 959 Hamap Phosphoenolpyruvate carboxylase [ppc]. 15 959 IPR022805 GO:0006099|GO:0008964|GO:0015977
Trre11g02479 959 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 585 597 IPR033129 -
Trre11g02479 959 Gene3D Phosphoenolpyruvate/pyruvate domain 300 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02479 Trre-Chr11 29863969 29868733 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02479 K01595 - gmx:100805069 1779.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02479 11 29863969 29868733 Trre11g02479 11 29863969 29868733 ECH