Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02396 ATGAATATTCTAATGACATTTTGTTGTTGTCTACTTTTATTTACAGTTCAACTATCCTATTATTCTGTATCTCCCACACTTTCTCCTTCTAGACCAATTGTTAGCATCCCACTATATCACAAGAGAATACTCAATAACACCTACATGAACAACTCAAGAGGAATTCAACATCCTAACACAGAAGCCACAACAGATATATACCCAATAAATGATGCATATGCAATGTTCTTATGGATTGGTACTCCAGTACAAATTGTATTTGTTATGGTAGATATAGGAAGCCCAATTTCATGGTCACAATGTGATCCATGTAATAGTTGTTACCCTATGCAACGACCACCCTTTAATACTAGAGCATCAAGTACCTTTAGAGAACTTGGTTGCTACTCAGATACATGTTTGATTCCAATGATGAAGGATATTTTTGGTATATGCCCTGGATGGACATGTAGATACAATGTGAAATATGGTACTAAGGGTCAATCTCATTCCTTAGGTGTAATGGTAACTGATACACTTACCTTTGAAAATTCCAATACTGAGGTTAAGAATTTCATCATTGGTTGTGGAGATTCATATGAAGGTCCATTTAAGACTCAATTCACAGGTGTTTTTGGTTTAGGTCGCGGTCCGCTTTCGGTTCAAAGTCAACTCAATGCAAAGGCATTTTCTTTTTGTCCTGTAAGTCAAGGGTCACAGAAACCTTCACCTCTTGAGTTTTATGAAACTCTACCTGAAATGGACCAACATGGTGATAACAGCTCAATTATGGTATCCCTGACAGAGAATAGTGCATACCCTTTTTATTATTTTTTGCAATTTGTAGGTATAAGTATTAATGGGTTTATGTTGGATATTCAATCTAGAGTTTGGGGTTATGGCTTGAATTATGATGGTGGAGTTATTGTAGATATTGGAACAATGCTAACTTATTTACCAAGTGATGCTTATAGTGTATTCAGATCAGAGATACTTAAAATAGATCATAACCTTACAAAGAAGCCTGGATATGAGGGTTTAGAGTTTTGTTATGAAGATGATTCATCTAATGTATTTCCAACTATTGAACTTTTCTTTGGAAATGGAAATATTGCAGGTGAAAATTTTGTGTCTTATAAGTTGAACAATAATCAGTTACTTTTTAGAGTAGAAGACACTGTTTGTCTATCATTTGCAGAAGGAAAAAGCTCTGCTCTCACAGTGATTGGTAGTAACCAACTCAAAGGAACTTTACTGATGTATGATCTTGTTAATGAGATCCTTATTCTTACATTTAATAACTGTTAG 1287 0.3465 MNILMTFCCCLLLFTVQLSYYSVSPTLSPSRPIVSIPLYHKRILNNTYMNNSRGIQHPNTEATTDIYPINDAYAMFLWIGTPVQIVFVMVDIGSPISWSQCDPCNSCYPMQRPPFNTRASSTFRELGCYSDTCLIPMMKDIFGICPGWTCRYNVKYGTKGQSHSLGVMVTDTLTFENSNTEVKNFIIGCGDSYEGPFKTQFTGVFGLGRGPLSVQSQLNAKAFSFCPVSQGSQKPSPLEFYETLPEMDQHGDNSSIMVSLTENSAYPFYYFLQFVGISINGFMLDIQSRVWGYGLNYDGGVIVDIGTMLTYLPSDAYSVFRSEILKIDHNLTKKPGYEGLEFCYEDDSSNVFPTIELFFGNGNIAGENFVSYKLNNNQLLFRVEDTVCLSFAEGKSSALTVIGSNQLKGTLLMYDLVNEILILTFNNC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02396 428 ProSiteProfiles Peptidase family A1 domain profile. 73 424 IPR033121 -
Trre11g02396 428 Pfam Xylanase inhibitor N-terminal 73 238 IPR032861 -
Trre11g02396 428 Gene3D Acid Proteases 51 237 IPR021109 -
Trre11g02396 428 Pfam Xylanase inhibitor C-terminal 270 421 IPR032799 -
Trre11g02396 428 SUPERFAMILY Acid proteases 70 422 IPR021109 -
Trre11g02396 428 PANTHER ASPARTYL PROTEASES 8 419 IPR001461 GO:0004190|GO:0006508
Trre11g02396 428 CDD pepsin_A_like_plant 72 419 IPR034161 -
Trre11g02396 428 Gene3D Acid Proteases 241 428 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02396 Trre-Chr11 28513725 28515011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre11g02396 34 428 Miscellaneous Gene Families AT1G44130 25.298 2.15e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02396 - K22683 tpra:123914878 812.757