Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre11g02319 ATGGAAGAAAAAAAGCAGAATGAAATCCAAATCCGAACCCTAACCGGCGAATCTATCATTCTTCACATCACTCCCTCTGCCACCGTCCAACACCTCAAGCTTCTACTCAACACCTCTTTCCCTCCCGCCACCAATTCCCCCAATTTCCATCTCTTTTTTAAGGGAAATAAATTGCAATTGCATGATGAAATTGGTTCGTATATCATTCAATCTGGCGAGTTTCTTGTCTTGGTTCCATTTGCCAAGAAGGAACTAACTCGATTGGAGAAACCGGATTCAGTTTTATCTTCTTCAAATGTTGCTTGCAATGCTCCAACCTCTAATCTCGCGGATACAACATGGTCTAATATAATGGAAGATTTGTCTGAATTACGCGAAACTGCTGAAAAAATTGATGATAATAATGTATCTAATTTGGAAAGGAATAAAGAGAGAACTGTGGAGGTTGAAATCAAAAGGGGTTTGGATTCTGAGAAAGAGATAGAGCTTCCTTATCATTTTATATTGAATACATTGGATTGTACTAATGAGAGTGCTCTTGGAAAGAGTAATTGTGAGGTTTTTTCGAAGGTTTTGGAATCGGTGAATTGTTTATCTGGTTTGCCTCTTGGACATTGCCAGTTGTTCAAGAGAGCATGTTTGATGAAGGGAGCTTGTGGCAATGATGGTGGTGGTGTTACTTGCTTGTGTCCACCGTGGTTGAAGACGGTTGTGAAGTCATTTGCTTTTGTAAATATTTTTTCCGCATTTCTTCATTTGAAGGGTAGGAAGCTCACCATGAGTCTACTGGAAGAAGGACTTGATCAGTTTTCGAAGTTTGGAGTCAAACTTGGTCTCCATGACATGAAACATCTTTCCCTTCTTTGTCCTCATCTAGTAAGTTTTGTAGATGACATAGAGAAGGCGAGTTTTGGTGATGTCATTGTTGTAGTAAATCATTCAACTAGCAATGAAGATCAAATTGAAGATAATCCTAAAAGAGCTCGCAAGTCGTTGTATATTTCAAAGATTGTCAGTACATTAAAGCGAAGAGACAGTTCTTTCCGAAAATATCTGGGGTGGGCTTTTGAGCAGATTCAGTTTGAAATTGGAGATGAGATGAATGTGAGAATTTCTTTCGAAGAACTGCTTGCAGCAGTCAAGGACTGTGATTTTACCAGTAAAGGAAACAAACCAAAACGTGTAAAGAGAAGCTCAACTTCCTCAAGACCTGACATGGATCACATTGGGTGTCATGACACAAAGTCATTACTGGCTGTGGACATGGTTGAACATCTTAAGAAAGGAATTGGATCTGAAGGACAGATTGTGCATATTGAAGACATATGTGCCAGAAAAGCCATTTACAGTGAGATCCCAGCTGAACTATCAGAGAAAACGAGATCTGCACTAAAGTATATTGGTGTTTCCAAATTGTATAGTCACCAGGCAGAATCCATACAAGCCTCCATTCTCGGGAAGAATGTTGTTGTGGCTACAATGACATCTAGTGGAAAATCTCTTTGCTACAACCTGCCTGTTCTAGAAGAGTTGTTTCAGAATTCATCGTCATGTGCTTTGTACATATTTCCTACAAAGGCGTTGGCTCAAGATCAATTACGATCTTTGTTACACATGACAAAAGAATTTGATGTTGACTTAAATATTGGTATATATGATGGTGACACTTCTCATAGTGAAAGGACATGGCTACGTGATAATTCTAGACTGCTAATCACAAATCCAGATATGTTACACATATCAATCTTGCCCCACCATCGGCTATTTAGCCGGATTTTATCGAATCTAAGGTTTCTGGTAATTGATGAAACTCATACCTACAAGGGAGCATTTGGATGTCATACCGCTCTTATATTGAGGAGGCTTAGGCGACTCTGCTCACATGTATATGGAGCTGTTCCTTCGTTTATTTTATCTACTGCAACTTCTGCAAATCCTCATGAGCATTCTATGGAACTTGCAAATTTACCCACAGTGGAGTTATTTCAGAAAGATGGAAGTCCATCTGCAAGAAAACTTTTCATACTTTGGAATCCTGCTTTGCGCCCAAAAACTCTATCCAGTAAAGCTCGGTTTGCTATGAATAATGATGAGTTGGCAGATGAAAGTGCTAATTTTGTTCGTTCAAGCCCAATCGTGGATGTTTCACGCCTTCTTGCAGAAATGGTTCAGCACGGTCTTCGCTGCATTGCATTTTGTAAATCACGGAAACTTTGTGAGCTGGTTTTATCATATACACGTGAGATTCTTCAGGAGACAGCCCCACATCTACTTGATTCCATATGCGCATATCGTGGTGGCTATATTGCAGAGGAAAGAAGAAAAATAGAGAGTGCATTTTTTGGTGGTAAAATTTGTGGTGTTGCTGCAACTAATGCTCTTGAATTGGGCATTGATGTTGGAGAAATTGATGTCACTCTGCATCTAGGATTTCCTGGTAGTATTGCAAGCTTTTGGCAACAAGCTGGTAGAGGTGGGAGGCGAGATAGACCATCTCTTGCTATCTATGTTGCATTTGGTGGACCACTTGATCAATACTTCATGAAAAATCCTAGAAAGCTTTTTGAAAGGCCAATTGAATGCTGTCATATTGATTCTCAGAACAAGCAGGTTCTTGAACAGCATTTGGCCTGTGCAGCTCATGAACACCCTCTGAGTGTGCAGTATGATGAGCAGTATTTTGGTGCTTGCTTAGAGAGTTGTTTGAATTCTCTAAAAGATAGAGGATACTTATGTCCTGATCTTTCTGATTCTTCTAGAATTTGGAACTATATTGGTCCTGAGAAATTACCTTCACATGCAGTCAATATCCGTGCAATAGAAACTGTTAGATACAGTGTTATAGATCAGAAAAAGAATGATGTCCTTGAAGAGATAGAGGAAAGCAAGGCTTTCTTTCAGGTATATGAAGGTGCAGTGTACTTACGTCAGGGGAAAACCTATTTGGTTGAAAAATTAGATCTATCTAGCAAAACTGCTTTCTGCAAAGAGGCTGATCTGAAGTATTATACAAAGACTCGAGATTACACCGATATCCATGTCATTGGGGGTAATATTGCTTATCCAGTAATTGATTCCACCATGTTTACAAAAACAAATGTGCGTGCTAATGCATGCCGAGTGACAACTACTTGGTTTGGATTTTATCGTATTTGGAAAGGAAGCAATCAAATCATTGATACTGTTGATCTAGCACTTCCTCAATATTCATACGAGTCCCAGGCAGTCTGGGTACCGGTGCCACAGTCAGTAAAAGAAGCAGTGGTCAAGCAAAATTATGATTTCCGTGGAGGTTTGCATGCTGCTTCACATGCTGTTTTACACGTAGTGCCTTTACATATAGTGTGCAACTTGTCTGATTTGGCTCCCGAGTGTCCAAATCCTCATGACAGCCGATATTATCCTGAAAGAATCTTAATATATGATCAAAATCCTGGAGGGTCTGGAATTTCAGTACAGGCTCAACCCCATTTCTCAAAGTTCCTGACAGCTGCTCTAGAAGTGCTCACTTGTTGCCGCTGTTCTACTGAAGTTGGTTGCCCTAATTGTGTTCAGAGTTTTGCTTGCCACGAGTATAATGAAGTTTTGCACAAGGATGCGGCTATTATGATCATCAAGGGTATCCTAGATGCAGAGAATTAG 3642 0.3992 MEEKKQNEIQIRTLTGESIILHITPSATVQHLKLLLNTSFPPATNSPNFHLFFKGNKLQLHDEIGSYIIQSGEFLVLVPFAKKELTRLEKPDSVLSSSNVACNAPTSNLADTTWSNIMEDLSELRETAEKIDDNNVSNLERNKERTVEVEIKRGLDSEKEIELPYHFILNTLDCTNESALGKSNCEVFSKVLESVNCLSGLPLGHCQLFKRACLMKGACGNDGGGVTCLCPPWLKTVVKSFAFVNIFSAFLHLKGRKLTMSLLEEGLDQFSKFGVKLGLHDMKHLSLLCPHLVSFVDDIEKASFGDVIVVVNHSTSNEDQIEDNPKRARKSLYISKIVSTLKRRDSSFRKYLGWAFEQIQFEIGDEMNVRISFEELLAAVKDCDFTSKGNKPKRVKRSSTSSRPDMDHIGCHDTKSLLAVDMVEHLKKGIGSEGQIVHIEDICARKAIYSEIPAELSEKTRSALKYIGVSKLYSHQAESIQASILGKNVVVATMTSSGKSLCYNLPVLEELFQNSSSCALYIFPTKALAQDQLRSLLHMTKEFDVDLNIGIYDGDTSHSERTWLRDNSRLLITNPDMLHISILPHHRLFSRILSNLRFLVIDETHTYKGAFGCHTALILRRLRRLCSHVYGAVPSFILSTATSANPHEHSMELANLPTVELFQKDGSPSARKLFILWNPALRPKTLSSKARFAMNNDELADESANFVRSSPIVDVSRLLAEMVQHGLRCIAFCKSRKLCELVLSYTREILQETAPHLLDSICAYRGGYIAEERRKIESAFFGGKICGVAATNALELGIDVGEIDVTLHLGFPGSIASFWQQAGRGGRRDRPSLAIYVAFGGPLDQYFMKNPRKLFERPIECCHIDSQNKQVLEQHLACAAHEHPLSVQYDEQYFGACLESCLNSLKDRGYLCPDLSDSSRIWNYIGPEKLPSHAVNIRAIETVRYSVIDQKKNDVLEEIEESKAFFQVYEGAVYLRQGKTYLVEKLDLSSKTAFCKEADLKYYTKTRDYTDIHVIGGNIAYPVIDSTMFTKTNVRANACRVTTTWFGFYRIWKGSNQIIDTVDLALPQYSYESQAVWVPVPQSVKEAVVKQNYDFRGGLHAASHAVLHVVPLHIVCNLSDLAPECPNPHDSRYYPERILIYDQNPGGSGISVQAQPHFSKFLTAALEVLTCCRCSTEVGCPNCVQSFACHEYNEVLHKDAAIMIIKGILDAEN 1213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre11g02319 1213 CDD SF2_C_Hrq 674 838 - -
Trre11g02319 1213 SMART helicmild6 748 829 IPR001650 -
Trre11g02319 1213 Pfam DEAD/DEAH box helicase 474 644 IPR011545 GO:0003676|GO:0005524
Trre11g02319 1213 SMART ultradead3 468 674 IPR014001 -
Trre11g02319 1213 CDD DEXHc_Hrq1-like 472 653 - -
Trre11g02319 1213 Gene3D - 445 662 IPR027417 -
Trre11g02319 1213 SUPERFAMILY Ubiquitin-like 8 83 IPR029071 -
Trre11g02319 1213 Pfam Ubiquitin family 9 78 IPR000626 GO:0005515
Trre11g02319 1213 Pfam Helicase conserved C-terminal domain 718 827 IPR001650 -
Trre11g02319 1213 PANTHER ATP-DEPENDENT HELICASE HRQ1 28 1212 - -
Trre11g02319 1213 Gene3D - 705 907 IPR027417 -
Trre11g02319 1213 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 480 661 IPR014001 -
Trre11g02319 1213 FunFam DEAD/DEAH box helicase 707 856 - -
Trre11g02319 1213 CDD Ubl_ubiquitin_like 9 78 - -
Trre11g02319 1213 ProSiteProfiles Ubiquitin domain profile. 7 78 IPR000626 GO:0005515
Trre11g02319 1213 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 714 872 IPR001650 -
Trre11g02319 1213 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 519 847 IPR027417 -
Trre11g02319 1213 Gene3D - 4 80 - -
Trre11g02319 1213 Pfam MrfA Zn-binding domain 1102 1184 IPR018973 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre11g02319 Trre-Chr11 27644296 27660954 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre11g02319 - - cam:101511069 2098.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre11g02319 11 27644296 27660954 Trre11g02319 11 27644296 27660954 ECH